branch staging updated (e806297 -> 4c1918d)

[guix-commits]

mbakke pushed a change to branch staging
in repository guix.

      from  e806297   gnu: python-pyqt: Fix runtime error.
      adds  fbde378   gnu: r-colorout: Update to 1.2-2.
      adds  df12af9   gnu: r-colorout: Don't use unstable tarball.
      adds  3778132   gnu: arc-theme: Update to 20190917.
      adds  d2e1a0a   gnu: libdv: Don't use NAME in source URI.
      adds  4de93b2   gnu: bpython: Update to 0.18.
      adds  93803c6   gnu: snakemake: Update to 5.7.1.
      adds  8994ae3   gnu: snakemake: Order inputs alphabetically.
      adds  776aa52   gnu: Remove snakemake@4.
      adds  b977d90   gnu: certbot, python-acme: Update to 0.39.0.
      adds  6f91eab   gnu: emacs-org-ql: Update to 0.3.2.
      adds  f0bbf89   gnu: emacs-hierarchy: Enable tests.
      adds  6dc424f   gnu: backup: Remove my copyright.
      adds  f2d6d9b   gnu: Add simple-parallel-tasks.
      adds  1403e1f   gnu: Add pcsxr.
      adds  ff093d7   gnu: enlightenment: Fix desktop session file creation.
      adds  f6a0be2   gnu: Add gens-gs.
      adds  a273796   gnu: make-bootstrap: Memoize 'glibc-for-bootstrap'.
      adds  674e143   download: Honor /etc/ssl/certs when 'SSL_CERT_DIR' is not 
set.
      adds  5ac5f2c   services: sddm: Add default configuration.
      adds  8cf3e16   services: sddm: Deprecate 'sddm-service' procedure.
      adds  cfe8d80   services: sddm: Add description.
      adds  5f15b42   services: agetty: Really import (gnu build linux-boot).
      adds  cacb557   doc: Add support for "guix-cookbook.texi" to 'build.scm'.
      adds  3d7fc2d   gnu: r-data-table: Update to 1.12.6.
      adds  ca2b1dc   gnu: r-xcms: Update to 3.6.2.
      adds  e9d48bd   gnu: yasm: Disable parallel tests.
      adds  6fc03fc   gnu: Add ephemeralpg.
      adds  4e07032   gnu: emacs-counsel-dash: Update to 0.1.3-3.7027868.
      adds  05b0b05   gnu: Add emacs-auth-source-pass.
      adds  2f000f2   doc: More responsive online manual.
      adds  84261a2   services: inputattach: Add 'baud-rate' parameter.
      adds  58b1328   gnu: Add gloo.
      adds  0cd4a74   gnu: Add pdfarranger.
      adds  8b438f8   gnu: pdfarranger: Add 'wrap-for-typelib' phase.
      adds  f5d6c88   gnu: mingw-w64: Add -winpthreads variants.
      adds  8ce774a   gnu: emacs-counsel-dash: Require emacs-ivy.
      adds  9d67480   gnu: mongodb: Fix build.
      adds  487392c   gnu: Add cl-heap.
      adds  bb20a99   gnu: Add curry-compose-reader-macros.
      adds  9d9a82d   gnu: Add yason.
      adds  5bb3272   gnu: sbcl-iterate: Add missing native input.
      adds  93b2739   gnu: Add ecl-iterate.
      adds  54d761d   gnu: Add stefil.
      adds  9574d42   gnu: Add graph.
      adds  a4daf99   gnu: Add sbcl-graph-dot.
      adds  b090bdc   gnu: Add sbcl-graph-json.
      adds  6fc9c6f   gnu: font-awesome: Download using git-fetch.
      adds  0201e34   gnu: libtommath: Update to 1.2.0.
      adds  c1ff907   gnu: Add python-pytest-isort.
      adds  df12233   gnu: Add python-tinycss2.
      adds  7d3f481   gnu: Add python-cssselect2.
      adds  f2f41e1   gnu: Add python-cairosvg.
      adds  ea1801e   gnu: Add python-pyphen.
      adds  73f0ed8   gnu: Add weasyprint.
      adds  00850bb   services: elogind, gnome, mate, xfce: Fix config type 
predicate identifiers.
      adds  208cc52   doc: Use the right title in HTML indices for the cookbook.
      adds  84af1e7   gnu: guile-json: Deprecate the 'guile-json' variable.
      adds  af56166   gnu: seahorse: Update to 3.30.1.1.
      adds  1271281   machine: Implement 'digital-ocean-environment-type'.
      adds  c93994b   machine: digital-ocean: Rename 'enable-ipv6' to 
'enable-ipv6?'.
      adds  cdc81cc   gnu: Add gperftools.
      adds  0cb0c5d   gnu: perl-error: Update to 0.17028.
      adds  252bb46   gnu: r-stringdist: Update to 0.9.5.5.
      adds  c42625c   gnu: r-rcppgsl: Update to 0.3.7.
      adds  d45b928   gnu: perl-cgi-simple: Update to 1.22.
      adds  d37e8e5   gnu: python-rst.linker: Update to 1.11.
      adds  1d4944f   gnu: parallel: Update to 20191022.
      adds  225aaf2   gnu: python-psutil: Update to 5.6.3.
      adds  3feae38   gnu: lm-sensors: Update to 3.6.0.
      adds  6d4ed78   gnu: python-pyld: Update to 1.0.5.
      adds  8fbccd4   gnu: python-wsgiproxy2: Update to 0.4.6.
      adds  6028914   gnu: emacs-editorconfig: Update to 0.8.1.
      adds  32c894e   gnu: emacs-debpaste: Use GIT-FILE-NAME.
      adds  a379dda   Revert "gnu: Add weasyprint."
      adds  353f5f7   gnu: guix-data-service: Enable build time tests.
      adds  7f81cce   gnu: guile-json: Export.
      adds  f3fd5f4   gnu: Add emacs-evil-args.
      adds  e99fbca   gnu: Add rust-ansi-term-0.11.
      adds  00f5b06   gnu: Add rust-atty-0.2.
      adds  c505052   gnu: Add rust-autocfg-0.1.
      adds  b249da1   gnu: Add rust-bitflags-1.1.
      adds  df22526   gnu: Add rust-cfg-if-0.1.
      adds  26be7f2   gnu: Add rust-clap-2.
      adds  71d111f   gnu: Add rust-cloudabi-0.0.
      adds  795835a   gnu: Add rust-fuchsia-cprng-0.1.
      adds  372a6bf   gnu: Add rust-itoa-0.4.
      adds  5fafb36   gnu: Add rust-libc-0.2.
      adds  f38fb01   gnu: Add rust-log-0.4.
      adds  b5a9cb7   gnu: Add rust-numtoa-0.1.
      adds  88ce4ef   gnu: Add rust-proc-macro2-1.0.
      adds  e8a28c8   gnu: Add rust-quote-1.0.
      adds  054fd40   gnu: Add rust-rand-0.6.
      adds  800bc0f   gnu: Add rust-rand-chacha-0.1.
      adds  235d82d   gnu: Add rust-rand-core-0.4.
      adds  a41ea6d   gnu: Add rust-rand-core-0.3.
      adds  56fed05   gnu: Add rust-rand-hc-0.1.
      adds  300ec64   gnu: Add rust-rand-isaac-0.1.
      adds  9c28386   gnu: Add rust-rand-jitter-0.1.
      adds  9ad71c4   gnu: Add rust-rand-os-0.1.
      adds  1e956eb   gnu: Add rust-rand-pcg-0.1.
      adds  308480c   gnu: Add rust-rand-xorshift-0.1.
      adds  847172e   gnu: Add rust-rdrand-0.4.
      adds  3f03cb2   gnu: Add rust-redox-syscall-0.1.
      adds  a8c86af   gnu: Add rust-redox-termios-0.1.
      adds  4b35956   gnu: Add rust-remove-dir-all-0.5.
      adds  df9a615   gnu: Add rust-ryu-1.0.
      adds  582630a   gnu: Add rust-serde-1.0.
      adds  199d800   gnu: Add rust-serde-derive-1.0.
      adds  1a7e2aa   gnu: Add rust-serde-json-1.0.
      adds  10eeb23   gnu: Add rust-strsim-0.8.
      adds  b62f74a   gnu: Add rust-syn-1.0.
      adds  a2f821e   gnu: Add rust-tempfile-3.0.
      adds  438a917   gnu: Add rust-termion-1.5.
      adds  da6a445   gnu: Add rust-textwrap-0.11.
      adds  5cf89ce   gnu: Add rust-toml-0.5.
      adds  21bd039   gnu: Add rust-unicode-width-0.1.
      adds  0f48c1f   gnu: Add rust-unicode-xid-0.2.
      adds  e92a943   gnu: Add rust-vec-map-0.8.
      adds  55777a2   gnu: Add rust-winapi-i686-pc-windows-gnu-0.4.
      adds  e08ba87   gnu: Add rust-winapi-x86-64-pc-windows-gnu-0.4.
      adds  cec27a2   gnu: Add rust-winapi-0.3.
      adds  221012e   gnu: Add rust-cbindgen.
      adds  77e0ceb   gnu: Add weasyprint.
      adds  59d452d   gnu: enlightenment: Hardcode 'bc' location.
      adds  74afaa3   cve: Rewrite to read the JSON feed instead of the XML 
feed.
      adds  9efa2c2   lint: Re-enable CVE checker.
      adds  3da6bd5   gnu: cuirass: Update to 80b6e89.
      adds  ee42e9f   gnu: wine-staging: Update to 4.18.
      adds  dff0eed   gnu: simple-scan: Update home page.
      adds  3f4ea9a   gnu: avahi: Fix CVE-2018-1000845 and duplicate 
CVE-2017-6519.
      adds  4163b6d   gnu: avahi: Don't use package/inherit.
       new  4c1918d   Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |    2 +-
 doc/build.scm                                      |   51 +-
 doc/guix.texi                                      |   77 +-
 gnu/local.mk                                       |    6 +
 gnu/machine/digital-ocean.scm                      |  422 +++++++
 gnu/packages/assembly.scm                          |    4 +
 gnu/packages/avahi.scm                             |   12 +
 gnu/packages/backup.scm                            |    1 -
 gnu/packages/bioconductor.scm                      |    4 +-
 gnu/packages/ci.scm                                |    6 +-
 gnu/packages/cpp.scm                               |   37 +
 gnu/packages/cran.scm                              |   12 +-
 gnu/packages/cross-base.scm                        |   13 +-
 gnu/packages/databases.scm                         |   73 +-
 gnu/packages/emacs-xyz.scm                         |  163 ++-
 gnu/packages/emulators.scm                         |   96 ++
 gnu/packages/enlightenment.scm                     |   10 +
 gnu/packages/fonts.scm                             |   27 +-
 gnu/packages/gnome.scm                             |   27 +-
 gnu/packages/guile.scm                             |   17 +-
 gnu/packages/linux.scm                             |    8 +-
 gnu/packages/lisp.scm                              |  250 ++++
 gnu/packages/machine-learning.scm                  |   36 +
 gnu/packages/make-bootstrap.scm                    |   55 +-
 gnu/packages/mingw.scm                             |   47 +-
 gnu/packages/multiprecision.scm                    |   43 +-
 gnu/packages/parallel.scm                          |    4 +-
 gnu/packages/patches/avahi-CVE-2018-1000845.patch  |   42 +
 .../patches/sbcl-graph-asdf-definitions.patch      |   70 ++
 .../seahorse-gkr-use-0-on-empty-flags.patch        |   32 +
 .../patches/weasyprint-library-paths.patch         |   38 +
 gnu/packages/pdf.scm                               |  128 +-
 gnu/packages/perl.scm                              |    4 +-
 gnu/packages/python-check.scm                      |   31 +
 gnu/packages/python-web.scm                        |   74 +-
 gnu/packages/python-xyz.scm                        |  110 +-
 gnu/packages/rust-cbindgen.scm                     | 1019 ++++++++++++++++
 gnu/packages/statistics.scm                        |   20 +-
 gnu/packages/tls.scm                               |    7 +-
 gnu/packages/video.scm                             |    4 +-
 gnu/packages/web.scm                               |    9 +-
 gnu/packages/wine.scm                              |    7 +-
 gnu/services/base.scm                              |  229 ++--
 gnu/services/desktop.scm                           |   38 +-
 gnu/services/sddm.scm                              |   10 +-
 guix/build/download.scm                            |    3 +-
 guix/cve.scm                                       |  376 ++++--
 guix/lint.scm                                      |   16 +-
 tests/cve-sample.json                              | 1279 ++++++++++++++++++++
 tests/cve-sample.xml                               |  616 ----------
 tests/cve.scm                                      |   83 +-
 51 files changed, 4618 insertions(+), 1130 deletions(-)
 create mode 100644 gnu/machine/digital-ocean.scm
 create mode 100644 gnu/packages/patches/avahi-CVE-2018-1000845.patch
 create mode 100644 gnu/packages/patches/sbcl-graph-asdf-definitions.patch
 create mode 100644 gnu/packages/patches/seahorse-gkr-use-0-on-empty-flags.patch
 create mode 100644 gnu/packages/patches/weasyprint-library-paths.patch
 create mode 100644 gnu/packages/rust-cbindgen.scm
 create mode 100644 tests/cve-sample.json
 delete mode 100644 tests/cve-sample.xml