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18/29: gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
From: |
guix-commits |
Subject: |
18/29: gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri. |
Date: |
Wed, 4 Dec 2019 03:46:46 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit d78db088623fcfbefc40dafe11d2ecf042842a41
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 4 09:33:35 2019 +0100
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
* gnu/packages/bioconductor.scm
(r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
---
gnu/packages/bioconductor.scm | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 86d4735..ca4b57c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -522,12 +522,8 @@ track. The database is exposed as a @code{TxDb} object.")
(version "3.4.6")
(source (origin
(method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://bioconductor.org/packages/"
- "release/data/annotation/src/contrib"
- "/TxDb.Hsapiens.UCSC.hg38.knownGene_"
- version ".tar.gz"))
+ (uri (bioconductor-uri "TxDb.Hsapiens.UCSC.hg38.knownGene"
+ version 'annotation))
(sha256
(base32
"12j7rri9r129v9w1yiqadg952dx462dh092sxif3r5kk8l7bxkn9"))))
- 29/29: gnu: r-rversions: Update to 2.0.1., (continued)
- 29/29: gnu: r-rversions: Update to 2.0.1., guix-commits, 2019/12/04
- 03/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri., guix-commits, 2019/12/04
- 28/29: gnu: r-survival: Update to 3.1-8., guix-commits, 2019/12/04
- 21/29: gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri., guix-commits, 2019/12/04
- 20/29: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri., guix-commits, 2019/12/04
- 25/29: gnu: r-arrmdata: Use bioconductor-uri., guix-commits, 2019/12/04
- 06/29: gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri., guix-commits, 2019/12/04
- 26/29: gnu: r-hsmmsinglecell: Use bioconductor-uri., guix-commits, 2019/12/04
- 01/29: gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri., guix-commits, 2019/12/04
- 15/29: gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri., guix-commits, 2019/12/04
- 18/29: gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.,
guix-commits <=
- 22/29: gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri., guix-commits, 2019/12/04