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03/47: gnu: Add r-bios2cor.
From: |
guix-commits |
Subject: |
03/47: gnu: Add r-bios2cor. |
Date: |
Fri, 13 Dec 2019 16:42:13 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit db07641a676cf057597fb2e08bac7e391cb846d6
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 13 13:31:20 2019 +0100
gnu: Add r-bios2cor.
* gnu/packages/cran.scm (r-bios2cor): New variable.
---
gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1c3d40d..d6013d3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16044,3 +16044,36 @@ In addition, various utility functions are provided to
enable the statistical
and graphical power of the R environment to work with biological sequence and
structural data.")
(license license:gpl2+)))
+
+(define-public r-bios2cor
+ (package
+ (name "r-bios2cor")
+ (version "2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Bios2cor" version))
+ (sha256
+ (base32
+ "1rrz0vs6wbkwys3l5jv1rdnlhyb4r1q9pv7jlnmsx6c1b4f4vz5n"))))
+ (properties `((upstream-name . "Bios2cor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bigmemory" ,r-bigmemory)
+ ("r-bio3d" ,r-bio3d)
+ ("r-circular" ,r-circular)
+ ("r-igraph" ,r-igraph)))
+ (home-page "https://cran.r-project.org/web/packages/Bios2cor/")
+ (synopsis "From biological sequences and simulations to correlation
analysis")
+ (description
+ "This package provides utilities for computation and analysis of
+correlation/covariation in multiple sequence alignments and in side chain
+motions during molecular dynamics simulations. Features include the
+computation of correlation/covariation scores using a variety of scoring
+functions between either sequence positions in alignments or side chain
+dihedral angles in molecular dynamics simulations and utilities to analyze the
+correlation/covariation matrix through a variety of tools including network
+representation and principal components analysis. In addition, several
+utility functions are based on the R graphical environment to provide friendly
+tools for help in data interpretation.")
+ (license license:gpl2+)))
- branch master updated (c45fdf9 -> 1c2e3d7), guix-commits, 2019/12/13
- 03/47: gnu: Add r-bios2cor.,
guix-commits <=
- 07/47: gnu: r-shiny: Update to 1.4.0., guix-commits, 2019/12/13
- 04/47: gnu: Add r-networkd3., guix-commits, 2019/12/13
- 02/47: gnu: Add r-bio3d., guix-commits, 2019/12/13
- 06/47: gnu: Add r-fastmap., guix-commits, 2019/12/13
- 10/47: gnu: Add r-abcadm., guix-commits, 2019/12/13
- 27/47: gnu: Add r-accrual., guix-commits, 2019/12/13
- 25/47: gnu: Add r-fgui., guix-commits, 2019/12/13
- 24/47: gnu: Add r-smpracticals., guix-commits, 2019/12/13
- 29/47: gnu: Add r-mda., guix-commits, 2019/12/13
- 09/47: gnu: Add r-abc-rap., guix-commits, 2019/12/13