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22/47: gnu: Add r-activedriverwgs.
From: |
guix-commits |
Subject: |
22/47: gnu: Add r-activedriverwgs. |
Date: |
Fri, 13 Dec 2019 16:42:18 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 72b67e0b36cd472c893f99f4a3ab9a491e41000b
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 13 18:40:58 2019 +0100
gnu: Add r-activedriverwgs.
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e584a7b..ca29fb5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6059,3 +6059,37 @@ features (e.g. genes, microRNAs).")
data. This modified test allows for testing differential expression in qPCR
data.")
(license license:gpl2+)))
+
+;; This is a CRAN package, but it depends on Bioconductor packages, so we put
+;; it here.
+(define-public r-activedriverwgs
+ (package
+ (name "r-activedriverwgs")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ActiveDriverWGS" version))
+ (sha256
+ (base32
+ "08l9dj8d3cd74z1dqn8n4yqykwvqjxsfa067wnxyh7xnfvvnm5v1"))))
+ (properties
+ `((upstream-name . "ActiveDriverWGS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-plyr" ,r-plyr)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://cran.r-project.org/web/packages/ActiveDriverWGS/")
+ (synopsis "Driver discovery tool for cancer whole genomes")
+ (description
+ "This package provides a method for finding an enrichment of cancer
+simple somatic mutations (SNVs and Indels) in functional elements across the
+human genome. ActiveDriverWGS detects coding and noncoding driver elements
+using whole genome sequencing data.")
+ (license license:gpl3)))
- 27/47: gnu: Add r-accrual., (continued)
- 27/47: gnu: Add r-accrual., guix-commits, 2019/12/13
- 25/47: gnu: Add r-fgui., guix-commits, 2019/12/13
- 24/47: gnu: Add r-smpracticals., guix-commits, 2019/12/13
- 29/47: gnu: Add r-mda., guix-commits, 2019/12/13
- 09/47: gnu: Add r-abc-rap., guix-commits, 2019/12/13
- 05/47: gnu: Add r-aasea., guix-commits, 2019/12/13
- 01/47: gnu: r-desolve: Update description., guix-commits, 2019/12/13
- 11/47: gnu: Add r-rglpk., guix-commits, 2019/12/13
- 19/47: gnu: Add r-emojifont., guix-commits, 2019/12/13
- 14/47: gnu: Add r-abemus., guix-commits, 2019/12/13
- 22/47: gnu: Add r-activedriverwgs.,
guix-commits <=
- 26/47: gnu: Add r-tcltk2., guix-commits, 2019/12/13
- 31/47: gnu: Add r-sparselda., guix-commits, 2019/12/13
- 08/47: gnu: Add r-abacus., guix-commits, 2019/12/13
- 20/47: gnu: Add r-abstractr., guix-commits, 2019/12/13
- 13/47: gnu: Add r-abcrlda., guix-commits, 2019/12/13
- 17/47: gnu: Add r-showtextdb., guix-commits, 2019/12/13
- 33/47: gnu: Add r-ace2fastq., guix-commits, 2019/12/13
- 30/47: gnu: Add r-elasticnet., guix-commits, 2019/12/13
- 18/47: gnu: Add r-showtext., guix-commits, 2019/12/13
- 21/47: gnu: Add r-abtest., guix-commits, 2019/12/13