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20/20: gnu: python-bbknn: Update to 1.3.6.
From: |
guix-commits |
Subject: |
20/20: gnu: python-bbknn: Update to 1.3.6. |
Date: |
Mon, 23 Dec 2019 18:32:01 -0500 (EST) |
brettgilio pushed a commit to branch master
in repository guix.
commit 5bc95d2bcd3392b4f5bd1c1d918bbae767b6e45c
Author: Brett Gilio <address@hidden>
Date: Mon Dec 23 17:31:06 2019 -0600
gnu: python-bbknn: Update to 1.3.6.
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.3.6.
[arguments]: Disable tests until migration to python-scikit-learn.
[propgated-inputs]: Remove python-faiss, python-scanpy.
[propgated-inputs]: Add python-scipy, python-umap-learn.
---
gnu/packages/bioinformatics.scm | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6488642..e01022e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14,6 +14,7 @@
;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <address@hidden>
;;; Copyright © 2019 Maxim Cournoyer <address@hidden>
;;; Copyright © 2019 Brian Leung <address@hidden>
+;;; Copyright © 2019 Brett Gilio <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -13289,21 +13290,23 @@ million cells.")
(define-public python-bbknn
(package
(name "python-bbknn")
- (version "1.3.1")
+ (version "1.3.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bbknn" version))
(sha256
(base32
- "1qgdganvj3lyxj84v7alm23b9vqhwpn8z0115qndpnpy90qxynwz"))))
+ "1jbsh01f57zj4bhvjr3jh4532zznqd6nccmgrl3qi9gnhkf7c4y0"))))
(build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; TODO: Enable after migration to scikit-learn.
(propagated-inputs
`(("python-annoy" ,python-annoy)
("python-cython" ,python-cython)
- ("python-faiss" ,python-faiss)
("python-numpy" ,python-numpy)
- ("python-scanpy" ,python-scanpy)))
+ ("python-scipy" ,python-scipy)
+ ("python-umap-learn" ,python-umap-learn)))
(home-page "https://github.com/Teichlab/bbknn")
(synopsis "Batch balanced KNN")
(description "BBKNN is a batch effect removal tool that can be directly
- 06/20: gnu: python-sphinxcontrib-jsmath: Fix license., (continued)
- 06/20: gnu: python-sphinxcontrib-jsmath: Fix license., guix-commits, 2019/12/23
- 07/20: gnu: python-sphinxcontrib-programoutput: Update to 0.15., guix-commits, 2019/12/23
- 08/20: gnu: python-sphinxcontrib-programoutput: Fix home-page., guix-commits, 2019/12/23
- 09/20: gnu: python-sphinxcontrib-svg2pdfconverter: Update to 1.0.1., guix-commits, 2019/12/23
- 11/20: gnu: python-sphinxcontrib-svg2pdfconverter: Reflow description., guix-commits, 2019/12/23
- 12/20: gnu: python-sphinxcontrib-svg2pdfconverter: Fix license., guix-commits, 2019/12/23
- 10/20: gnu: python-sphinxcontrib-svg2pdfconverter: Fix home-page., guix-commits, 2019/12/23
- 17/20: gnu: python-numba: Update to 0.46.0., guix-commits, 2019/12/23
- 14/20: gnu: python-eventlet: Use HTTPS home page URI., guix-commits, 2019/12/23
- 15/20: gnu: Add python-umap-learn., guix-commits, 2019/12/23
- 20/20: gnu: python-bbknn: Update to 1.3.6.,
guix-commits <=
- 13/20: gnu: python-eventlet: Update to 0.25.1., guix-commits, 2019/12/23
- 18/20: gnu: Add python-flit., guix-commits, 2019/12/23
- 16/20: gnu: python-llvmlite: Update to 0.30.0., guix-commits, 2019/12/23
- 19/20: gnu: Add python-pathtools., guix-commits, 2019/12/23