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08/09: gnu: python-scanpy: Update to 1.4.5.1.
From: |
guix-commits |
Subject: |
08/09: gnu: python-scanpy: Update to 1.4.5.1. |
Date: |
Fri, 6 Mar 2020 03:17:00 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 858e642e4cbf81d4c1875dda638d3923f013f7ba
Author: Ricardo Wurmus <address@hidden>
AuthorDate: Fri Mar 6 09:14:30 2020 +0100
gnu: python-scanpy: Update to 1.4.5.1.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1.
[source]: Fetch from pypi.
[propagated-inputs]: Add python-legacy-api-wrap, python-packaging,
python-patsy, and python-umap-learn.
[native-inputs]: Add python-setuptools-scm.
---
gnu/packages/bioinformatics.scm | 21 +++++++++++----------
1 file changed, 11 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0c12e7c..b0ec57b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13238,18 +13238,14 @@ in RNA-seq data.")
(define-public python-scanpy
(package
(name "python-scanpy")
- (version "1.4")
- ;; Fetch from git because the pypi tarball does not include tests.
+ (version "1.4.5.1")
(source
(origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/theislab/scanpy.git")
- (commit version)))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (pypi-uri "scanpy" version))
(sha256
(base32
- "0zn6x6c0cnm1a20i6isigwb51g3pr9zpjk8r1minjqnxi5yc9pm4"))))
+ "14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -13276,18 +13272,23 @@ in RNA-seq data.")
("python-igraph" ,python-igraph)
("python-joblib" ,python-joblib)
("python-louvain" ,python-louvain)
+ ("python-legacy-api-wrap" ,python-legacy-api-wrap)
("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx)
("python-numba" ,python-numba)
+ ("python-packaging" ,python-packaging)
("python-pandas" ,python-pandas)
+ ("python-patsy" ,python-patsy)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)
("python-seaborn" ,python-seaborn)
("python-statsmodels" ,python-statsmodels)
- ("python-tables" ,python-tables)))
+ ("python-tables" ,python-tables)
+ ("python-umap-learn" ,python-umap-learn)))
(native-inputs
- `(("python-pytest" ,python-pytest)))
+ `(("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/scanpy")
(synopsis "Single-Cell Analysis in Python.")
(description "Scanpy is a scalable toolkit for analyzing single-cell gene
- branch master updated (1d24cc6 -> fecd325), guix-commits, 2020/03/06
- 01/09: gnu: python-tables: Do not detect CPU features., guix-commits, 2020/03/06
- 02/09: gnu: python-tables: Use later hdf5 version., guix-commits, 2020/03/06
- 03/09: gnu: Add python-pathspec., guix-commits, 2020/03/06
- 04/09: gnu: python-black: Update to 19.10b0., guix-commits, 2020/03/06
- 05/09: gnu: Add python-pytest-black., guix-commits, 2020/03/06
- 06/09: gnu: Add python-get-version., guix-commits, 2020/03/06
- 07/09: gnu: Add python-legacy-api-wrap., guix-commits, 2020/03/06
- 09/09: gnu: python-aiohttp: Update to 3.6.2., guix-commits, 2020/03/06
- 08/09: gnu: python-scanpy: Update to 1.4.5.1.,
guix-commits <=