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247/296: gnu: r-flowworkspace: Update to 4.0.3.
From: |
guix-commits |
Subject: |
247/296: gnu: r-flowworkspace: Update to 4.0.3. |
Date: |
Fri, 12 Jun 2020 19:30:41 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a9af09df177bc7bdba0375c7fd57d8369b8a9800
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 13 01:01:29 2020 +0200
gnu: r-flowworkspace: Update to 4.0.3.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioconductor.scm | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 04c203a..bce6b4a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6117,14 +6117,14 @@ for other R packages to compile and link against.")
(define-public r-flowworkspace
(package
(name "r-flowworkspace")
- (version "3.34.1")
+ (version "4.0.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version))
(sha256
(base32
- "1ijbc6z9ljhrw3cqr02smgplhrfg44gzrb1dq4gbrpq3nj4khhpn"))))
+ "1fi76m6r5x4w390996989rignffdzl11k3prpimpwjd3566c276w"))))
(properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system)
(propagated-inputs
@@ -6136,21 +6136,24 @@ for other R packages to compile and link against.")
("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr)
("r-flowcore" ,r-flowcore)
- ("r-flowviz" ,r-flowviz)
+ ("r-ggplot2" ,r-ggplot2)
("r-graph" ,r-graph)
- ("r-gridextra" ,r-gridextra)
("r-lattice" ,r-lattice)
("r-latticeextra" ,r-latticeextra)
("r-matrixstats" ,r-matrixstats)
("r-ncdfflow" ,r-ncdfflow)
("r-rbgl" ,r-rbgl)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppparallel" ,r-rcppparallel)
("r-rgraphviz" ,r-rgraphviz)
+ ("r-rhdf5lib" ,r-rhdf5lib)
("r-rprotobuflib" ,r-rprotobuflib)
("r-scales" ,r-scales)
- ("r-stringr" ,r-stringr)))
+ ("r-stringr" ,r-stringr)
+ ("r-xml" ,r-xml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/flowWorkspace/")
(synopsis "Infrastructure for working with cytometry data")
(description
- 223/296: gnu: r-biocfilecache: Update to 1.12.0., (continued)
- 223/296: gnu: r-biocfilecache: Update to 1.12.0., guix-commits, 2020/06/12
- 225/296: gnu: r-rbowtie: Update to 1.28.0., guix-commits, 2020/06/12
- 224/296: gnu: r-iclusterplus: Update to 1.24.0., guix-commits, 2020/06/12
- 227/296: gnu: r-rhisat2: Update to 1.4.0., guix-commits, 2020/06/12
- 231/296: gnu: r-birta: Update to 1.31.0., guix-commits, 2020/06/12
- 236/296: gnu: r-rsubread: Update to 2.2.2., guix-commits, 2020/06/12
- 237/296: gnu: r-flowutils: Update to 1.52.0., guix-commits, 2020/06/12
- 239/296: gnu: r-cytolib: Update to 2.0.3., guix-commits, 2020/06/12
- 241/296: gnu: r-flowmeans: Update to 1.48.0., guix-commits, 2020/06/12
- 242/296: gnu: r-ncdfflow: Update to 2.34.0., guix-commits, 2020/06/12
- 247/296: gnu: r-flowworkspace: Update to 4.0.3.,
guix-commits <=
- 251/296: gnu: r-flowsom: Update to 1.20.0., guix-commits, 2020/06/12
- 252/296: gnu: r-mixomics: Update to 6.12.1., guix-commits, 2020/06/12
- 255/296: gnu: r-cicero: Update to 1.6.0., guix-commits, 2020/06/12
- 258/296: gnu: r-watermelon: Update to 1.32.0., guix-commits, 2020/06/12
- 264/296: gnu: r-timeseriesexperiment: Update to 1.6.0., guix-commits, 2020/06/12
- 280/296: gnu: r-chemminer: Update to 3.40.0., guix-commits, 2020/06/12
- 259/296: gnu: r-gdsfmt: Update to 1.24.0., guix-commits, 2020/06/12
- 268/296: gnu: r-unifiedwmwqpcr: Update to 1.24.0., guix-commits, 2020/06/12
- 269/296: gnu: r-bgmix: Update to 1.48.0., guix-commits, 2020/06/12
- 270/296: gnu: r-bgx: Update to 1.54.0., guix-commits, 2020/06/12