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298/318: gnu: r-mutationalpatterns: Update to 3.0.1.
From: |
guix-commits |
Subject: |
298/318: gnu: r-mutationalpatterns: Update to 3.0.1. |
Date: |
Fri, 20 Nov 2020 08:41:16 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 18fca4ea498a79f108def5c5a9588a8e72de2f81
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:06:22 2020 +0100
gnu: r-mutationalpatterns: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++--------
1 file changed, 15 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c2103c5..d0a73db 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8807,33 +8807,40 @@ library implementing most of the pipeline's features.")
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
- (version "3.0.0")
+ (version "3.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
- "127mq4fkarvvsbaacqr3k429l5x74lmjdh4z4rnifkc18xrmkp8h"))))
+ "1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
;; These two packages are suggested packages
+ ("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-genomicranges" ,r-genomicranges)
+ ("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggalluvial" ,r-ggalluvial)
+ ("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
+ ("r-magrittr" ,r-magrittr)
("r-nmf" ,r-nmf)
- ("r-plyr" ,r-plyr)
("r-pracma" ,r-pracma)
- ("r-reshape2" ,r-reshape2)
- ("r-cowplot" ,r-cowplot)
- ("r-ggdendro" ,r-ggdendro)
+ ("r-purrr" ,r-purrr)
("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")
- 266/318: gnu: r-msnid: Update to 1.24.0., (continued)
- 266/318: gnu: r-msnid: Update to 1.24.0., guix-commits, 2020/11/20
- 276/318: gnu: r-dirichletmultinomial: Update to 1.32.0., guix-commits, 2020/11/20
- 283/318: gnu: r-erma: Update to 1.6.0., guix-commits, 2020/11/20
- 284/318: gnu: r-ldblock: Update to 1.20.0., guix-commits, 2020/11/20
- 289/318: import: cran: Update the Bioconductor version to 3.12., guix-commits, 2020/11/20
- 290/318: gnu: Add r-ggalluvial., guix-commits, 2020/11/20
- 291/318: gnu: Add r-matrixgenerics., guix-commits, 2020/11/20
- 292/318: gnu: r-delayedarray: Fix build., guix-commits, 2020/11/20
- 294/318: gnu: r-hpar: Update to 1.32.1., guix-commits, 2020/11/20
- 296/318: gnu: r-genomicfeatures: Update to 1.42.1., guix-commits, 2020/11/20
- 298/318: gnu: r-mutationalpatterns: Update to 3.0.1.,
guix-commits <=
- 299/318: gnu: r-complexheatmap: Update to 2.6.2., guix-commits, 2020/11/20
- 145/318: gnu: r-cytoml: Update to 2.2.0., guix-commits, 2020/11/20
- 148/318: gnu: r-depecher: Update to 1.6.0., guix-commits, 2020/11/20
- 156/318: gnu: r-seqbias: Update to 1.38.0., guix-commits, 2020/11/20
- 157/318: gnu: r-reqon: Update to 1.36.0., guix-commits, 2020/11/20
- 158/318: gnu: r-wavcluster: Update to 2.24.0., guix-commits, 2020/11/20
- 164/318: gnu: r-bgmix: Update to 1.50.0., guix-commits, 2020/11/20
- 166/318: gnu: r-bhc: Update to 1.42.0., guix-commits, 2020/11/20
- 174/318: gnu: r-bigpint: Update to 1.6.0., guix-commits, 2020/11/20
- 175/318: gnu: r-chemminer: Update to 3.42.0., guix-commits, 2020/11/20