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253/323: gnu: r-mutationalpatterns: Update to 3.0.1.
From: |
guix-commits |
Subject: |
253/323: gnu: r-mutationalpatterns: Update to 3.0.1. |
Date: |
Mon, 7 Dec 2020 15:14:06 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit a75330d6ddac397e305f828438d9c31136d5d61b
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:06:22 2020 +0100
gnu: r-mutationalpatterns: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++--------
1 file changed, 15 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f6d3203..4aa447d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8943,33 +8943,40 @@ library implementing most of the pipeline's features.")
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
- (version "2.0.0")
+ (version "3.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
- "02lyjiabyhmifycksvpcx29a0pb7z9xjw0hgg8n0sd0dy3afqhcm"))))
+ "1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
;; These two packages are suggested packages
("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-genomicranges" ,r-genomicranges)
+ ("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggalluvial" ,r-ggalluvial)
+ ("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
+ ("r-magrittr" ,r-magrittr)
("r-nmf" ,r-nmf)
- ("r-plyr" ,r-plyr)
("r-pracma" ,r-pracma)
- ("r-reshape2" ,r-reshape2)
- ("r-cowplot" ,r-cowplot)
- ("r-ggdendro" ,r-ggdendro)
+ ("r-purrr" ,r-purrr)
("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")
- 178/323: gnu: r-reactomepa: Update to 1.34.0., (continued)
- 178/323: gnu: r-reactomepa: Update to 1.34.0., guix-commits, 2020/12/07
- 177/323: gnu: r-graphite: Update to 1.36.0., guix-commits, 2020/12/07
- 199/323: gnu: r-hitc: Update to 1.34.0., guix-commits, 2020/12/07
- 204/323: gnu: r-delayedarray: Update to 0.16.0., guix-commits, 2020/12/07
- 52/323: gnu: r-ebseq: Update to 1.30.0., guix-commits, 2020/12/07
- 237/323: gnu: r-rsamtools: Update to 2.6.0., guix-commits, 2020/12/07
- 244/323: gnu: r-bsgenome: Update to 1.58.0., guix-commits, 2020/12/07
- 249/323: gnu: r-zlibbioc: Update to 1.36.0., guix-commits, 2020/12/07
- 269/323: gnu: Add r-msmstests., guix-commits, 2020/12/07
- 251/323: gnu: r-bamsignals: Update to 1.22.0., guix-commits, 2020/12/07
- 253/323: gnu: r-mutationalpatterns: Update to 3.0.1.,
guix-commits <=
- 261/323: gnu: r-mzr: Update to 2.24.1., guix-commits, 2020/12/07
- 278/323: gnu: r-genomicfiles: Update to 1.26.0., guix-commits, 2020/12/07
- 282/323: gnu: r-organismdbi: Update to 1.32.0., guix-commits, 2020/12/07
- 277/323: gnu: r-gage: Update to 2.40.0., guix-commits, 2020/12/07
- 130/323: gnu: r-annotatr: Update to 1.16.0., guix-commits, 2020/12/07
- 233/323: gnu: r-annotationdbi: Update to 1.52.0., guix-commits, 2020/12/07
- 235/323: gnu: r-biocparallel: Update to 1.24.1., guix-commits, 2020/12/07
- 238/323: gnu: r-summarizedexperiment: Update to 1.20.0., guix-commits, 2020/12/07
- 241/323: gnu: r-rtracklayer: Update to 1.50.0., guix-commits, 2020/12/07
- 242/323: gnu: r-genomicfeatures: Update to 1.42.1., guix-commits, 2020/12/07