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262/323: gnu: r-mzr: Fix linking.
From: |
guix-commits |
Subject: |
262/323: gnu: r-mzr: Fix linking. |
Date: |
Mon, 7 Dec 2020 15:14:09 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 55aad1a1e9169d5b70fe53366aaba7887da4f8ab
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Nov 21 07:36:40 2020 +0100
gnu: r-mzr: Fix linking.
* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
---
gnu/packages/bioinformatics.scm | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0fb7d4c..299be4e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9701,9 +9701,14 @@ proteomics packages.")
(lambda _
(substitute* "src/Makevars"
(("\\./boost/libs.*") "")
- (("ARCH_OBJS=" line)
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a"))
+ (("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
+ (("\\ARCH_OBJS=" line)
(string-append line
- "\nARCH_LIBS=-lboost_system -lboost_regex \
+ "\nBOOST_LIBS=-lboost_system -lboost_regex \
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t)))))
(inputs
- 221/323: gnu: r-gostats: Update to 2.56.0., (continued)
- 221/323: gnu: r-gostats: Update to 2.56.0., guix-commits, 2020/12/07
- 226/323: gnu: r-biocstyle: Update to 2.18.0., guix-commits, 2020/12/07
- 236/323: gnu: r-biostrings: Update to 2.58.0., guix-commits, 2020/12/07
- 259/323: gnu: r-sva: Update to 3.38.0., guix-commits, 2020/12/07
- 271/323: gnu: r-aroma-light: Update to 3.20.0., guix-commits, 2020/12/07
- 250/323: gnu: r-rhtslib: Update to 1.22.0., guix-commits, 2020/12/07
- 265/323: gnu: r-vsn: Update to 3.58.0., guix-commits, 2020/12/07
- 266/323: gnu: r-mzid: Update to 1.28.0., guix-commits, 2020/12/07
- 260/323: gnu: r-protgenerics: Update to 1.22.0., guix-commits, 2020/12/07
- 254/323: gnu: r-tximport: Update to 1.18.0., guix-commits, 2020/12/07
- 262/323: gnu: r-mzr: Fix linking.,
guix-commits <=
- 280/323: gnu: r-dirichletmultinomial: Update to 1.32.0., guix-commits, 2020/12/07
- 274/323: gnu: r-annotationhub: Update to 2.22.0., guix-commits, 2020/12/07
- 283/323: gnu: r-biovizbase: Update to 1.38.0., guix-commits, 2020/12/07
- 284/323: gnu: r-ggbio: Update to 1.38.0., guix-commits, 2020/12/07
- 311/323: gnu: Add r-catalyst., guix-commits, 2020/12/07
- 125/323: gnu: r-rqc: Update to 1.24.0., guix-commits, 2020/12/07
- 126/323: gnu: r-birewire: Update to 3.22.0., guix-commits, 2020/12/07
- 134/323: gnu: r-cytolib: Update to 2.2.0., guix-commits, 2020/12/07
- 140/323: gnu: r-rprotobuflib: Update to 2.2.0., guix-commits, 2020/12/07
- 141/323: gnu: Add r-aws-signature., guix-commits, 2020/12/07