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319/323: gnu: r-gqtlbase: Update to 1.21.1.
From: |
guix-commits |
Subject: |
319/323: gnu: r-gqtlbase: Update to 1.21.1. |
Date: |
Mon, 7 Dec 2020 15:14:29 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 004716170a41390f4598e6498612c65c91a8824d
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Oct 30 16:01:26 2020 +0100
gnu: r-gqtlbase: Update to 1.21.1.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++--
1 file changed, 12 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b427bcc..16eb28b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10563,16 +10563,26 @@ interval to data view, mismatch pileup, and several
splicing summaries.")
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
- (version "1.20.4")
+ (version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
- "1ly14vhhqxjpbxjypi6ppd37dycabdhf4ny4nsvp9969k418zv41"))))
+ "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; This is an upstream bug.
+ (add-after 'unpack 'fix-imports
+ (lambda _
+ (substitute* "NAMESPACE"
+ ((".*maxffmode.*") "")
+ (("importFrom\\(ff,.*") "import(ff)\n"))
+ #t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
- 205/323: gnu: r-hdf5array: Update to 1.18.0., (continued)
- 205/323: gnu: r-hdf5array: Update to 1.18.0., guix-commits, 2020/12/07
- 217/323: gnu: r-annotationforge: Update to 1.32.0., guix-commits, 2020/12/07
- 225/323: gnu: r-biocviews: Update to 1.58.0., guix-commits, 2020/12/07
- 230/323: gnu: r-limma: Update to 3.46.0., guix-commits, 2020/12/07
- 234/323: gnu: r-biomart: Update to 2.46.0., guix-commits, 2020/12/07
- 243/323: gnu: r-topgo: Update to 2.42.0., guix-commits, 2020/12/07
- 298/323: gnu: r-yapsa: Update to 1.16.0., guix-commits, 2020/12/07
- 302/323: gnu: r-delayedmatrixstats: Update to 1.12.0., guix-commits, 2020/12/07
- 317/323: gnu: r-watermelon: Update to 1.34.0., guix-commits, 2020/12/07
- 318/323: gnu: r-bigmelon: Update to 1.16.0., guix-commits, 2020/12/07
- 319/323: gnu: r-gqtlbase: Update to 1.21.1.,
guix-commits <=
- 321/323: gnu: r-delayedmatrixstats: Update to 1.12.1., guix-commits, 2020/12/07
- 208/323: gnu: r-cytolib: Fix r-rhdf5libs linking., guix-commits, 2020/12/07
- 215/323: gnu: r-deseq2: Update to 1.30.0., guix-commits, 2020/12/07
- 219/323: gnu: r-gseabase: Update to 1.52.0., guix-commits, 2020/12/07
- 220/323: gnu: r-category: Update to 2.56.0., guix-commits, 2020/12/07
- 222/323: gnu: r-shortread: Update to 1.48.0., guix-commits, 2020/12/07
- 223/323: gnu: r-systempiper: Update to 1.24.2., guix-commits, 2020/12/07
- 224/323: gnu: r-grohmm: Update to 1.24.0., guix-commits, 2020/12/07
- 232/323: gnu: r-biobase: Update to 2.50.0., guix-commits, 2020/12/07
- 245/323: gnu: r-impute: Update to 1.64.0., guix-commits, 2020/12/07