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branch master updated (533935c -> ebf11de)
From: |
guix-commits |
Subject: |
branch master updated (533935c -> ebf11de) |
Date: |
Wed, 9 Dec 2020 06:46:09 -0500 (EST) |
rekado pushed a change to branch master
in repository guix.
from 533935c services: science.scm: Add missing copyright headers.
new 0a79b24 import: cran: Update the Bioconductor version to 3.12.
new 25f4e65 gnu: r-ideoviz: Update to 1.26.0.
new 5ef637d gnu: r-coverageview: Update to 1.28.0.
new a3e2e53 gnu: r-cummerbund: Update to 2.32.0.
new 70ab990 gnu: r-biocversion: Update to 3.12.0.
new aa311ea gnu: r-biocgenerics: Update to 0.36.0.
new c472549 gnu: r-affycomp: Update to 1.66.0.
new fa2d16c gnu: r-affycompatible: Update to 1.50.0.
new 3e82f9c gnu: r-affycontam: Update to 1.48.0.
new a92219b gnu: r-affycoretools: Update to 1.62.0.
new 8e6a2c3 gnu: r-affxparser: Update to 1.62.0.
new 7d56302 gnu: r-annotate: Update to 1.68.0.
new fa7578b gnu: r-hpar: Update to 1.32.1.
new d1ff360 gnu: r-regioner: Update to 1.22.0.
new c03c763 gnu: r-reportingtools: Update to 2.30.0.
new d72c4c9 gnu: r-geneplotter: Update to 1.68.0.
new 464df5c gnu: r-oligoclasses: Update to 1.52.0.
new 9af6fdf gnu: r-oligo: Update to 1.54.0.
new e9b60a2 gnu: r-qvalue: Update to 2.22.0.
new a0df9b9 gnu: Add r-rcppnumerical.
new 3b399e5 gnu: Add r-apeglm.
new a7f4a8b gnu: Add r-invgamma.
new deda231 gnu: Add r-etrunct.
new 755d16a gnu: Add r-mixsqp.
new c84762c gnu: Add r-ashr.
new 6e396c4 gnu: Add r-greylistchip.
new 341ebaa gnu: r-diffbind: Update to 3.0.7.
new 1e6920c gnu: r-multtest: Update to 2.46.0.
new f519b4d gnu: r-graph: Update to 1.68.0.
new d068d96 gnu: r-chippeakanno: Update to 3.24.0.
new 6e6c627 gnu: r-marray: Update to 1.68.0.
new ee052d0 gnu: r-cghbase: Update to 1.50.0.
new 7240003 gnu: r-cghcall: Update to 2.52.0.
new 3b64840 gnu: r-qdnaseq: Update to 1.26.0.
new 63572b0 gnu: r-bayseq: Update to 2.24.0.
new 03b655c gnu: r-riboprofiling: Update to 1.20.0.
new 3813c9f gnu: r-riboseqr: Update to 1.24.0.
new d27dfbf gnu: r-ctc: Update to 1.64.0.
new c97bcfb gnu: r-goseq: Update to 1.42.0.
new 3dab457 gnu: r-glimma: Update to 2.0.0.
new 0ef40b2 gnu: r-rots: Update to 1.18.0.
new 1c9bdfc gnu: r-plgem: Update to 1.62.0.
new 41d6b41 gnu: r-inspect: Update to 1.20.0.
new 874a774 gnu: r-dnabarcodes: Update to 1.20.0.
new a55b162 gnu: r-ruvseq: Update to 1.24.0.
new bbae34a gnu: r-biocneighbors: Update to 1.8.0.
new 4217307 gnu: r-destiny: Update to 3.4.0.
new 967fc58 gnu: r-savr: Update to 1.28.0.
new ff4d080 gnu: r-chipexoqual: Update to 1.14.0.
new 43d8db0 gnu: r-copynumber: Update to 1.30.0.
new 850f4c2 gnu: r-dnacopy: Update to 1.64.0.
new 939c888 gnu: r-ebseq: Update to 1.30.0.
new 37da451 gnu: r-karyoploter: Update to 1.16.0.
new 378d67c gnu: r-lpsymphony: Update to 1.18.0.
new 95b1f35 gnu: r-ihw: Update to 1.18.0.
new e26b5ee gnu: r-icobra: Update to 1.18.0.
new 532b106 gnu: r-mast: Update to 1.16.0.
new 38bc0bf gnu: r-monocle: Update to 2.18.0.
new 8396c45 gnu: r-noiseq: Update to 2.34.0.
new bde9dc5 gnu: r-scone: Update to 1.14.0.
new 5c4edee gnu: r-geoquery: Update to 2.58.0.
new e89966e gnu: r-illuminaio: Update to 0.32.0.
new 0fd830f gnu: r-siggenes: Update to 1.64.0.
new 50c5fee gnu: r-bumphunter: Update to 1.32.0.
new 37e0961 gnu: r-linnorm: Update to 2.14.0.
new 2a1a6d7 gnu: r-ioniser: Update to 2.14.0.
new 67837d4 gnu: r-varianttools: Update to 1.32.0.
new 9813d24 gnu: r-heatplus: Update to 2.36.0.
new b2084e4 gnu: r-gosemsim: Update to 2.16.1.
new 33c905b gnu: r-anota: Update to 1.38.0.
new 7dabc62 gnu: r-sigpathway: Update to 1.58.0.
new d68a9ff gnu: r-fgsea: Update to 1.16.0.
new aeb1d56 gnu: r-dose: Update to 3.16.0.
new b7d1ea7 gnu: Add r-shadowtext.
new eb3d17e gnu: r-enrichplot: Update to 1.10.1.
new 3fd84a4 gnu: r-clusterprofiler: Update to 3.18.0.
new 4f82931 gnu: r-mlinterfaces: Update to 1.70.0.
new c47a8cd gnu: r-a4core: Update to 1.38.0.
new fa51705 gnu: r-a4classif: Update to 1.38.0.
new 85155e2 gnu: r-a4preproc: Update to 1.38.0.
new 2fb8298 gnu: r-a4reporting: Update to 1.38.0.
new 564d427 gnu: r-a4base: Update to 1.38.0.
new 68efaaf gnu: r-a4: Update to 1.38.0.
new 8816139 gnu: r-abseqr: Update to 1.8.0.
new d5dcf1b gnu: r-bacon: Update to 1.18.0.
new 41071ed gnu: r-rgadem: Update to 2.38.0.
new a2bae16 gnu: r-motifdb: Update to 1.32.0.
new 301e549 gnu: r-motifbreakr: Update to 2.4.0.
new 4b4cd2b gnu: r-motifstack: Update to 1.34.0.
new 3928061 gnu: r-genomicscores: Update to 2.2.0.
new 2ba61c6 gnu: r-atacseqqc: Update to 1.14.4.
new c3b69d6 gnu: r-gofuncr: Update to 1.10.0.
new 8a7f711 gnu: r-abaenrichment: Update to 1.20.0.
new bc12a4b gnu: r-annotationfuncs: Update to 1.40.0.
new 5779154 gnu: r-annotationtools: Update to 1.64.0.
new 85c6636 gnu: r-allelicimbalance: Update to 1.28.0.
new ff8b915 gnu: r-aucell: Update to 1.12.0.
new ba0bf98 gnu: r-ebimage: Update to 4.32.0.
new 65ba4ba gnu: r-yamss: Update to 1.16.0.
new 0836ef6 gnu: r-gtrellis: Update to 1.22.0.
new 36f3a19 gnu: r-somaticsignatures: Update to 2.26.0.
new 3d41f0c gnu: r-gcrma: Update to 2.62.0.
new 48aaef2 gnu: r-simpleaffy: Update to 2.66.0.
new 94dee0a gnu: r-yaqcaffy: Update to 1.50.0.
new 72476ad gnu: r-roar: Update to 1.26.0.
new 7f71341 gnu: r-xbseq: Update to 1.22.0.
new f4e19e6 gnu: r-massspecwavelet: Update to 1.56.0.
new 1e536c3 gnu: Update r-msnbase to 2.16.0.
new fa2201c gnu: Add r-mscoreutils.
new a3af40e gnu: r-xcms: Update to 3.12.0.
new dc7c636 gnu: r-wrench: Update to 1.8.0.
new 397bcd2 gnu: r-wiggleplotr: Update to 1.14.0.
new ba53681 gnu: r-widgettools: Update to 1.68.0.
new d176ad3 gnu: r-webbioc: Update to 1.62.0.
new 59fafa1 gnu: r-zfpkm: Update to 1.12.0.
new 9834d1a gnu: r-rbowtie2: Update to 1.12.0.
new d115db7 gnu: r-progeny: Update to 1.12.0.
new 0067589 gnu: r-arrmnormalization: Update to 1.30.0.
new e65e81d gnu: r-biocfilecache: Update to 1.14.0.
new 4bc0675 gnu: r-iclusterplus: Update to 1.26.0.
new ea86d93 gnu: r-rbowtie: Update to 1.30.0.
new ca0271c gnu: r-sgseq: Update to 1.24.0.
new c36d888 gnu: r-rhisat2: Update to 1.6.0.
new 1b4c271 gnu: r-quasr: Update to 1.30.0.
new d8a7bf7 gnu: r-rqc: Update to 1.24.0.
new 979b1ed gnu: r-birewire: Update to 3.22.0.
new e78e04d gnu: r-multidataset: Update to 1.18.0.
new 59daf6e gnu: r-ropls: Update to 1.22.0.
new 26e4170 gnu: r-biosigner: Update to 1.18.0.
new 458aa44 gnu: r-annotatr: Update to 1.16.0.
new d764f1e gnu: r-rsubread: Update to 2.4.2.
new d361222 gnu: r-flowutils: Update to 1.54.0.
new a49024e gnu: r-consensusclusterplus: Update to 1.54.0.
new c6ccd4f gnu: r-cytolib: Update to 2.2.0.
new 3f0e93b gnu: r-flowcore: Update to 2.2.0.
new 2cd7813 gnu: r-flowmeans: Update to 1.50.0.
new eac1eaa gnu: r-ncdfflow: Update to 2.36.0.
new d5a53ab gnu: r-flowviz: Update to 1.54.0.
new 33c5b6d gnu: r-flowclust: Update to 3.28.0.
new 5bab0b7 gnu: r-rprotobuflib: Update to 2.2.0.
new 7f940bd gnu: Add r-aws-signature.
new ffa42c7 gnu: Add r-aws-s3.
new 1b34781 gnu: r-flowworkspace: Update to 4.2.0.
new fd11c7b gnu: r-flowstats: Update to 4.2.0.
new 5abf0a0 gnu: r-opencyto: Update to 2.2.0.
new 63033b1 gnu: r-cytoml: Update to 2.2.1.
new 1f7ddaf gnu: r-flowsom: Update to 1.22.0.
new 0e78ce3 gnu: r-mixomics: Update to 6.14.0.
new fafaeab gnu: r-depecher: Update to 1.6.0.
new 6481357 gnu: r-rcistarget: Update to 1.10.0.
new 7954fe1 gnu: r-cicero: Update to 1.8.0.
new 5d1bd61 gnu: r-genie3: Update to 1.12.0.
new e7b61ba gnu: r-roc: Update to 1.66.0.
new a50779b gnu: r-gdsfmt: Update to 1.26.0.
new 42e00c0 gnu: r-seqbias: Update to 1.38.0.
new 0c53f27 gnu: r-reqon: Update to 1.36.0.
new fd7e23b gnu: r-wavcluster: Update to 2.24.0.
new 87f704b gnu: r-timeseriesexperiment: Update to 1.8.0.
new 45ea773 gnu: r-variantfiltering: Update to 1.26.0.
new 44ecd5f gnu: r-variancepartition: Update to 1.20.0.
new 949626f gnu: r-htqpcr: Update to 1.44.0.
new fa7e242 gnu: r-unifiedwmwqpcr: Update to 1.26.0.
new fad5da3 gnu: r-bgmix: Update to 1.50.0.
new 3cebe27 gnu: r-bgx: Update to 1.56.0.
new 2219bef gnu: r-bhc: Update to 1.42.0.
new 4ec6656 gnu: r-bicare: Update to 1.48.0.
new d57be63 gnu: r-bifet: Update to 1.10.0.
new 3320f04 gnu: r-rsbml: Update to 2.48.0.
new 294fd58 gnu: r-hypergraph: Update to 1.62.0.
new 249b703 gnu: r-hyperdraw: Update to 1.42.0.
new 0f94a9e gnu: r-biggr: Update to 1.26.0.
new e80f826 gnu: r-bigmemoryextras: Update to 1.38.0.
new 1e28867 gnu: r-bigpint: Update to 1.6.0.
new 95ef268 gnu: r-chemminer: Update to 3.42.0.
new 2f36b04 gnu: r-bioassayr: Update to 1.28.0.
new 95e30d8 gnu: r-biobroom: Update to 1.22.0.
new 26224e0 gnu: r-graphite: Update to 1.36.0.
new a4f4a55 gnu: r-reactomepa: Update to 1.34.0.
new b0f3bfe gnu: r-ebarrays: Update to 2.54.0.
new 7dced9a gnu: r-bioccasestudies: Update to 1.52.0.
new abc18fc gnu: r-biocgraph: Update to 1.52.0.
new 49a7285 gnu: r-experimenthub: Update to 1.16.0.
new 13d0b78 gnu: r-multiassayexperiment: Update to 1.16.0.
new e29b15e gnu: r-bioconcotk: Update to 1.10.0.
new 072f722 gnu: r-biocor: Update to 1.14.0.
new 6a5d8ca gnu: r-biocpkgtools: Update to 1.8.0.
new ff4834c gnu: Add r-biocio.
new feb0cbf gnu: r-biocset: Update to 1.4.0.
new 7891c83 gnu: r-biocworkflowtools: Update to 1.16.0.
new 15be98c gnu: r-biodist: Update to 1.62.0.
new 7a24204 gnu: r-rgreat: Update to 1.22.0.
new 126846a gnu: r-m3c: Update to 1.12.0.
new 3cacc3b gnu: r-icens: Update to 1.62.0.
new e5b2c80 gnu: r-fourcseq: Update to 1.24.0.
new 8fa30df gnu: r-preprocesscore: Update to 1.52.0.
new b6348b0 gnu: r-rgraphviz: Update to 2.34.0.
new 724b770 gnu: r-xvector: Update to 0.30.0.
new 7105658 gnu: r-fithic: Update to 1.16.0.
new ed44a72 gnu: r-hitc: Update to 1.34.0.
new 5782047 gnu: r-s4vectors: Update to 0.28.0.
new cf6033e gnu: r-iranges: Update to 2.24.0.
new 47f6fd8 gnu: Add r-ggalluvial.
new c8da013 gnu: Add r-matrixgenerics.
new fafa94b gnu: r-delayedarray: Update to 0.16.0.
new 5992c25 gnu: r-hdf5array: Update to 1.18.0.
new 79cb6af gnu: r-rhdf5lib: Update to 1.12.0.
new c5ae5c1 gnu: r-rhdf5lib: Fix build.
new b58c4e7 gnu: r-cytolib: Fix r-rhdf5libs linking.
new 26cf5eb gnu: r-hdf5array: Fix r-rhdf5libs linking.
new ece564f gnu: r-flowworkspace: Fix r-rhdf5libs linking.
new 2b224f9 gnu: r-cytoml: Fix r-rhdf5libs linking.
new 0022e9f gnu: r-ncdfflow: Fix r-rhdf5libs link.
new fe4ce29 gnu: r-beachmat: Update to 2.6.1.
new 64cf667 gnu: r-genefilter: Update to 1.72.0.
new 936227f gnu: r-deseq2: Update to 1.30.0.
new a323c1e gnu: r-dexseq: Update to 1.36.0.
new 4451918 gnu: r-annotationforge: Update to 1.32.0.
new 7a57b22 gnu: r-rbgl: Update to 1.66.0.
new 03312f0 gnu: r-gseabase: Update to 1.52.0.
new afbc8e1 gnu: r-category: Update to 2.56.0.
new 74204b4 gnu: r-gostats: Update to 2.56.0.
new a05bb42 gnu: r-shortread: Update to 1.48.0.
new 5598f53 gnu: r-systempiper: Update to 1.24.2.
new 16a4822 gnu: r-grohmm: Update to 1.24.0.
new 182a080 gnu: r-biocviews: Update to 1.58.0.
new 1160c83 gnu: r-biocstyle: Update to 2.18.0.
new 2ae3b7d gnu: r-bioccheck: Update to 1.26.0.
new cde7fce gnu: r-genomeinfodb: Update to 1.26.0.
new 5996929 gnu: r-edger: Update to 3.32.0.
new d972ab6 gnu: r-limma: Update to 3.46.0.
new 7641dba gnu: r-genomicranges: Update to 1.42.0.
new 9103041 gnu: r-biobase: Update to 2.50.0.
new f517365 gnu: r-annotationdbi: Update to 1.52.0.
new 4fac3fe gnu: r-biomart: Update to 2.46.0.
new 444b101 gnu: r-biocparallel: Update to 1.24.1.
new 5d60273 gnu: r-biostrings: Update to 2.58.0.
new 9168ab0 gnu: r-rsamtools: Update to 2.6.0.
new 8607a53 gnu: r-summarizedexperiment: Update to 1.20.0.
new 3ca5b05 gnu: r-variantannotation: Update to 1.36.0.
new 077e813 gnu: r-genomicalignments: Update to 1.26.0.
new 92377e7 gnu: r-rtracklayer: Update to 1.50.0.
new 26e2184 gnu: r-genomicfeatures: Update to 1.42.1.
new 6a7de43 gnu: r-topgo: Update to 2.42.0.
new e2e11f0 gnu: r-bsgenome: Update to 1.58.0.
new a180744 gnu: r-impute: Update to 1.64.0.
new 44bf116 gnu: r-seqpattern: Update to 1.22.0.
new 2a70c96 gnu: r-genomation: Update to 1.22.0.
new 329879b gnu: r-seqlogo: Update to 1.56.0.
new b0d85e3 gnu: r-zlibbioc: Update to 1.36.0.
new 7283696 gnu: r-rhtslib: Update to 1.22.0.
new 2c15a1c gnu: r-bamsignals: Update to 1.22.0.
new a823a74 gnu: r-rcas: Update to 1.16.0.
new 6d5a4dd gnu: r-mutationalpatterns: Update to 3.0.1.
new ec0050c gnu: r-tximport: Update to 1.18.0.
new cad3eb4 gnu: r-annotationfilter: Update to 1.14.0.
new 36fd725 gnu: r-chipseq: Update to 1.40.0.
new 2ed79a0 gnu: r-copywriter: Update to 2.22.0.
new 99bd4f2 gnu: r-methylkit: Update to 1.16.0.
new 858eb98 gnu: r-sva: Update to 3.38.0.
new 4d9e168 gnu: r-protgenerics: Update to 1.22.0.
new badb467 gnu: r-mzr: Update to 2.24.1.
new 471ceb5 gnu: r-mzr: Fix linking.
new d6750c6 gnu: r-affyio: Update to 1.60.0.
new 6a6f38b gnu: r-affy: Update to 1.68.0.
new 75bdab8 gnu: r-vsn: Update to 3.58.0.
new b47560c gnu: r-mzid: Update to 1.28.0.
new 2ed937e gnu: r-pcamethods: Update to 1.82.0.
new e520c68 gnu: Add r-msmseda.
new 16f16b5 gnu: Add r-msmstests.
new 971f3a3 gnu: r-msnid: Update to 1.24.0.
new 8db8a68 gnu: r-aroma-light: Update to 3.20.0.
new 8e55b9f gnu: r-edaseq: Update to 2.24.0.
new 3becce3 gnu: r-interactivedisplaybase: Update to 1.28.0.
new a9dc755 gnu: r-annotationhub: Update to 2.22.0.
new b6dd072 gnu: r-fastseg: Update to 1.36.0.
new 143437c gnu: r-keggrest: Update to 1.30.0.
new 78cadd0 gnu: r-gage: Update to 2.40.0.
new 0fde2f9 gnu: r-genomicfiles: Update to 1.26.0.
new 4ef1e37 gnu: r-complexheatmap: Update to 2.6.2.
new 8962a13 gnu: r-dirichletmultinomial: Update to 1.32.0.
new 06fe3b7 gnu: r-ensembldb: Update to 2.14.0.
new 6e182c2 gnu: r-organismdbi: Update to 1.32.0.
new 3c6eecd gnu: r-biovizbase: Update to 1.38.0.
new 74a11b2 gnu: r-ggbio: Update to 1.38.0.
new 6e33890 gnu: r-snpstats: Update to 1.40.0.
new 494010a gnu: r-erma: Update to 1.6.0.
new 0a8d08e gnu: r-ldblock: Update to 1.20.0.
new 717e53f gnu: r-gviz: Update to 1.34.0.
new 83129ed gnu: r-gwascat: Update to 2.22.0.
new e707820 gnu: r-sushi: Update to 1.28.0.
new aca4ebe gnu: r-annaffy: Update to 1.62.0.
new a23310f gnu: Add r-bluster.
new 5e71998 gnu: Add r-sparsematrixstats.
new 60ad3c7 gnu: r-genomationdata: Update to 1.22.0.
new 35dae95 gnu: r-interactionset: Update to 1.18.0.
new dd9341f gnu: r-genomicinteractions: Update to 1.24.0.
new 798ec28 gnu: r-biocsingular: Update to 1.6.0.
new d0db04f gnu: r-yapsa: Update to 1.16.0.
new 4ef898d gnu: r-singlecellexperiment: Update to 1.12.0.
new 86fccee gnu: Add r-rhdf5filters.
new 53affb3 gnu: r-rhdf5: Update to 2.34.0.
new 10c87ec gnu: r-delayedmatrixstats: Update to 1.12.0.
new 0e60dda gnu: Add r-scuttle.
new d4b5d18 gnu: r-scater: Update to 1.18.3.
new b03c955 gnu: r-scran: Update to 1.18.0.
new 9709842 gnu: r-biocviews: Update to 1.58.1.
new 1174317 gnu: r-pcatools: Update to 2.2.0.
new 3f04b81 gnu: r-chipcomp: Update to 1.20.0.
new b856a48 gnu: r-scdd: Update to 1.14.0.
new 43bf50e gnu: r-ggcyto: Update to 1.18.0.
new 45dfb75 gnu: Add r-catalyst.
new e5a4198 gnu: r-minfi: Update to 1.36.0.
new 0b7dd44 gnu: r-methylumi: Update to 2.36.0.
new 4eeaa15 gnu: r-lumi: Update to 2.42.0.
new adf6edc gnu: r-quantro: Update to 1.24.0.
new 8db36c1 gnu: r-yarn: Update to 1.16.0.
new 9f6e2bf gnu: r-watermelon: Update to 1.34.0.
new 64f9fb3 gnu: r-bigmelon: Update to 1.16.0.
new 6a48187 gnu: r-gqtlbase: Update to 1.21.1.
new cde035e gnu: r-gqtlstats: Update to 1.21.3.
new 7601015 gnu: r-delayedmatrixstats: Update to 1.12.1.
new 4617cc7 gnu: r-rhtslib: Propagate zlib.
new ebf11de gnu: r-diffbind: Update to 3.0.8.
The 323 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 1381 ++++++++++++++++++++++++++-------------
gnu/packages/bioinformatics.scm | 478 ++++++++------
gnu/packages/cran.scm | 201 ++++++
guix/build-system/r.scm | 2 +-
guix/import/cran.scm | 4 +-
5 files changed, 1389 insertions(+), 677 deletions(-)
- branch master updated (533935c -> ebf11de),
guix-commits <=
- 01/323: import: cran: Update the Bioconductor version to 3.12., guix-commits, 2020/12/09
- 03/323: gnu: r-coverageview: Update to 1.28.0., guix-commits, 2020/12/09
- 09/323: gnu: r-affycontam: Update to 1.48.0., guix-commits, 2020/12/09
- 04/323: gnu: r-cummerbund: Update to 2.32.0., guix-commits, 2020/12/09
- 02/323: gnu: r-ideoviz: Update to 1.26.0., guix-commits, 2020/12/09
- 05/323: gnu: r-biocversion: Update to 3.12.0., guix-commits, 2020/12/09
- 07/323: gnu: r-affycomp: Update to 1.66.0., guix-commits, 2020/12/09
- 06/323: gnu: r-biocgenerics: Update to 0.36.0., guix-commits, 2020/12/09
- 10/323: gnu: r-affycoretools: Update to 1.62.0., guix-commits, 2020/12/09
- 13/323: gnu: r-hpar: Update to 1.32.1., guix-commits, 2020/12/09