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21/323: gnu: Add r-apeglm.
From: |
guix-commits |
Subject: |
21/323: gnu: Add r-apeglm. |
Date: |
Wed, 9 Dec 2020 06:46:19 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 3b399e514f55d2a9700a64f86462e071b5bb993d
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:25:46 2020 +0100
gnu: Add r-apeglm.
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 482a930..56d8036 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1630,6 +1630,33 @@ for numerical computing (numerical integration,
optimization, etc.) and their
integration with @code{Rcpp}.")
(license license:gpl2+)))
+(define-public r-apeglm
+ (package
+ (name "r-apeglm")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "apeglm" version))
+ (sha256
+ (base32
+ "0pix1fhxk2q89p2745fgsmxwics9rf10l392qhw3rw6v6ynhims2"))))
+ (properties `((upstream-name . "apeglm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-emdbook" ,r-emdbook)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rcppnumerical" ,r-rcppnumerical)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/apeglm")
+ (synopsis "Approximate posterior estimation for GLM coefficients")
+ (description "This package provides Bayesian shrinkage estimators for
+effect sizes for a variety of GLM models, using approximation of the
+posterior for individual coefficients.")
+ (license license:gpl2)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
- 05/323: gnu: r-biocversion: Update to 3.12.0., (continued)
- 05/323: gnu: r-biocversion: Update to 3.12.0., guix-commits, 2020/12/09
- 07/323: gnu: r-affycomp: Update to 1.66.0., guix-commits, 2020/12/09
- 06/323: gnu: r-biocgenerics: Update to 0.36.0., guix-commits, 2020/12/09
- 10/323: gnu: r-affycoretools: Update to 1.62.0., guix-commits, 2020/12/09
- 13/323: gnu: r-hpar: Update to 1.32.1., guix-commits, 2020/12/09
- 19/323: gnu: r-qvalue: Update to 2.22.0., guix-commits, 2020/12/09
- 17/323: gnu: r-oligoclasses: Update to 1.52.0., guix-commits, 2020/12/09
- 16/323: gnu: r-geneplotter: Update to 1.68.0., guix-commits, 2020/12/09
- 20/323: gnu: Add r-rcppnumerical., guix-commits, 2020/12/09
- 24/323: gnu: Add r-mixsqp., guix-commits, 2020/12/09
- 21/323: gnu: Add r-apeglm.,
guix-commits <=
- 22/323: gnu: Add r-invgamma., guix-commits, 2020/12/09
- 41/323: gnu: r-rots: Update to 1.18.0., guix-commits, 2020/12/09
- 29/323: gnu: r-graph: Update to 1.68.0., guix-commits, 2020/12/09
- 62/323: gnu: r-illuminaio: Update to 0.32.0., guix-commits, 2020/12/09
- 50/323: gnu: r-copynumber: Update to 1.30.0., guix-commits, 2020/12/09
- 56/323: gnu: r-icobra: Update to 1.18.0., guix-commits, 2020/12/09
- 60/323: gnu: r-scone: Update to 1.14.0., guix-commits, 2020/12/09
- 55/323: gnu: r-ihw: Update to 1.18.0., guix-commits, 2020/12/09
- 69/323: gnu: r-gosemsim: Update to 2.16.1., guix-commits, 2020/12/09
- 68/323: gnu: r-heatplus: Update to 2.36.0., guix-commits, 2020/12/09