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222/323: gnu: r-shortread: Update to 1.48.0.
From: |
guix-commits |
Subject: |
222/323: gnu: r-shortread: Update to 1.48.0. |
Date: |
Wed, 9 Dec 2020 06:47:28 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit a05bb428e470f2a908895249365ce0cb178e2471
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Oct 30 15:58:01 2020 +0100
gnu: r-shortread: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
---
gnu/packages/bioinformatics.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5fe661d..db410b6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7399,14 +7399,14 @@ testing and other simple calculations.")
(define-public r-shortread
(package
(name "r-shortread")
- (version "1.46.0")
+ (version "1.48.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ShortRead" version))
(sha256
(base32
- "0l4kdln69y6yhln0xiv2jmpxg05fjcglln406p43a2bqvk2lr03d"))))
+ "0w4m8d3h660mmr2ymp206r1n4aqssxmkv8yxkbr5y1swrahxzfk9"))))
(properties `((upstream-name . "ShortRead")))
(build-system r-build-system)
(inputs
@@ -7419,6 +7419,7 @@ testing and other simple calculations.")
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
+ ("r-rhtslib" ,r-rhtslib)
("r-hwriter" ,r-hwriter)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
- 176/323: gnu: r-biobroom: Update to 1.22.0., (continued)
- 176/323: gnu: r-biobroom: Update to 1.22.0., guix-commits, 2020/12/09
- 180/323: gnu: r-bioccasestudies: Update to 1.52.0., guix-commits, 2020/12/09
- 199/323: gnu: r-hitc: Update to 1.34.0., guix-commits, 2020/12/09
- 195/323: gnu: r-preprocesscore: Update to 1.52.0., guix-commits, 2020/12/09
- 207/323: gnu: r-rhdf5lib: Fix build., guix-commits, 2020/12/09
- 208/323: gnu: r-cytolib: Fix r-rhdf5libs linking., guix-commits, 2020/12/09
- 206/323: gnu: r-rhdf5lib: Update to 1.12.0., guix-commits, 2020/12/09
- 209/323: gnu: r-hdf5array: Fix r-rhdf5libs linking., guix-commits, 2020/12/09
- 216/323: gnu: r-dexseq: Update to 1.36.0., guix-commits, 2020/12/09
- 217/323: gnu: r-annotationforge: Update to 1.32.0., guix-commits, 2020/12/09
- 222/323: gnu: r-shortread: Update to 1.48.0.,
guix-commits <=
- 229/323: gnu: r-edger: Update to 3.32.0., guix-commits, 2020/12/09
- 126/323: gnu: r-birewire: Update to 3.22.0., guix-commits, 2020/12/09
- 133/323: gnu: r-consensusclusterplus: Update to 1.54.0., guix-commits, 2020/12/09
- 135/323: gnu: r-flowcore: Update to 2.2.0., guix-commits, 2020/12/09
- 138/323: gnu: r-flowviz: Update to 1.54.0., guix-commits, 2020/12/09
- 146/323: gnu: r-cytoml: Update to 2.2.1., guix-commits, 2020/12/09
- 148/323: gnu: r-mixomics: Update to 6.14.0., guix-commits, 2020/12/09
- 154/323: gnu: r-gdsfmt: Update to 1.26.0., guix-commits, 2020/12/09
- 156/323: gnu: r-reqon: Update to 1.36.0., guix-commits, 2020/12/09
- 159/323: gnu: r-variantfiltering: Update to 1.26.0., guix-commits, 2020/12/09