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319/323: gnu: r-gqtlbase: Update to 1.21.1.
From: |
guix-commits |
Subject: |
319/323: gnu: r-gqtlbase: Update to 1.21.1. |
Date: |
Wed, 9 Dec 2020 06:48:03 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 6a4818716d16613d56f0a4c7c8745ae75da8edb6
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Oct 30 16:01:26 2020 +0100
gnu: r-gqtlbase: Update to 1.21.1.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++--
1 file changed, 12 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42ebbe7..c758724 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10563,16 +10563,26 @@ interval to data view, mismatch pileup, and several
splicing summaries.")
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
- (version "1.20.4")
+ (version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
- "1ly14vhhqxjpbxjypi6ppd37dycabdhf4ny4nsvp9969k418zv41"))))
+ "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; This is an upstream bug.
+ (add-after 'unpack 'fix-imports
+ (lambda _
+ (substitute* "NAMESPACE"
+ ((".*maxffmode.*") "")
+ (("importFrom\\(ff,.*") "import(ff)\n"))
+ #t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
- 288/323: gnu: r-gviz: Update to 1.34.0., (continued)
- 288/323: gnu: r-gviz: Update to 1.34.0., guix-commits, 2020/12/09
- 284/323: gnu: r-ggbio: Update to 1.38.0., guix-commits, 2020/12/09
- 272/323: gnu: r-edaseq: Update to 2.24.0., guix-commits, 2020/12/09
- 296/323: gnu: r-genomicinteractions: Update to 1.24.0., guix-commits, 2020/12/09
- 292/323: gnu: Add r-bluster., guix-commits, 2020/12/09
- 297/323: gnu: r-biocsingular: Update to 1.6.0., guix-commits, 2020/12/09
- 307/323: gnu: r-pcatools: Update to 2.2.0., guix-commits, 2020/12/09
- 309/323: gnu: r-scdd: Update to 1.14.0., guix-commits, 2020/12/09
- 314/323: gnu: r-lumi: Update to 2.42.0., guix-commits, 2020/12/09
- 318/323: gnu: r-bigmelon: Update to 1.16.0., guix-commits, 2020/12/09
- 319/323: gnu: r-gqtlbase: Update to 1.21.1.,
guix-commits <=
- 322/323: gnu: r-rhtslib: Propagate zlib., guix-commits, 2020/12/09
- 182/323: gnu: r-experimenthub: Update to 1.16.0., guix-commits, 2020/12/09
- 186/323: gnu: r-biocpkgtools: Update to 1.8.0., guix-commits, 2020/12/09
- 220/323: gnu: r-category: Update to 2.56.0., guix-commits, 2020/12/09
- 231/323: gnu: r-genomicranges: Update to 1.42.0., guix-commits, 2020/12/09
- 234/323: gnu: r-biomart: Update to 2.46.0., guix-commits, 2020/12/09
- 235/323: gnu: r-biocparallel: Update to 1.24.1., guix-commits, 2020/12/09
- 242/323: gnu: r-genomicfeatures: Update to 1.42.1., guix-commits, 2020/12/09
- 198/323: gnu: r-fithic: Update to 1.16.0., guix-commits, 2020/12/09
- 171/323: gnu: r-biggr: Update to 1.26.0., guix-commits, 2020/12/09