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branch ungrafting updated (ba47c83 -> a7737f0)
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From: |
guix-commits |
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Subject: |
branch ungrafting updated (ba47c83 -> a7737f0) |
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Date: |
Sat, 12 Dec 2020 19:22:14 -0500 (EST) |
mbakke pushed a change to branch ungrafting
in repository guix.
from ba47c83 gnu: pango@1.42: Disable layout test.
add 2dd4f38 gnu: cuirass: Update to 0.0.1-56.697fa14.
add 770fb65 services: cuirass: Add queue-size option.
add ad6cf3d gnu: Add xcb-imdkit.
add aa5cfb3 gnu: Add fcitx5.
add 2d07803 gnu: Add fcitx5-lua.
add 69d3419 gnu: Add libime.
add 4394d37 gnu: Add fcitx5-qt.
add d4aca38 gnu: Add fcitx5-gtk.
add 9a23698 gnu: Add fcitx5-chinese-addons.
add ac1c753 gnu: Add fcitx5-configtool.
add af34f75 gnu: Add fcitx5-material-color-theme.
add 4e110f6 guix: opam: Remove stray `pk'.
add 59873d9 guix: opam: Filter implicit inputs.
add 15ee1b8 guix: opam: Pass default repository to recursive importer.
add a8dccd4 guix: opam: Add --repo argument to importer.
add ccc4d28 guix: opam: Add coq support in the importer.
add adbb62f gnu: fcitx5-material-color-theme: Add source file-name.
add e1d3b07 gnu: isync: Use OpenSSL 1.1.
add c9c3569 gnu: libmypaint: Update to 1.6.1.
add 8a55a39 gnu: Add mypaint.
add 2d1a621 gnu: mruby: Update to 2.1.2.
add 20e5658 gnu: ocaml-menhir: Update to 20200211.
add e9edaf3 database: Remove unnecessary module imports.
add 4a98735 gnu: autotools: Add version 2.70.
add 2e30823 daemon: 'Agent' constructor takes a list of environment
variables.
add 79c6614 daemon: Use 'Agent' to spawn 'guix substitute --query'.
add a618a8c daemon: Factorize substituter agent spawning.
add 711df9e daemon: Run 'guix substitute --substitute' as an agent.
add 5ff5214 substitute: Cache and reuse connections while substituting.
add bfe4cdf daemon: Raise an error if substituter doesn't send the
expected hash.
add 799f066 import: opam: Adjust test to latest 'opam->guix-package'
changes.
add 456421f gnu: guix: Update to 799f066.
add 02b21f3 gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971].
add 54f777c gnu: linux-libre: Update to 5.9.13.
add 66b1b55 gnu: linux-libre 5.4: Update to 5.4.82.
add a2eae5e gnu: linux-libre 4.19: Update to 4.19.162.
add 2b0185a gnu: linux-libre 4.14: Update to 4.14.211.
add f7c2896 gnu: Add go-github-com-go-sql-driver-mysql.
add 016501a gnu: Add go-github-com-jmespath-go-jmespath.
add 9941036 gnu: Add go-github-com-aws-sdk.
add 8e2aad2 gnu: Add lemonbar-xft.
add 5560bd7 gnu: monero: Update to 0.17.1.6.
add 53c4800 gnu: monero-gui: Update to 0.17.1.6.
add 533935c services: science.scm: Add missing copyright headers.
add 0a79b24 import: cran: Update the Bioconductor version to 3.12.
add 25f4e65 gnu: r-ideoviz: Update to 1.26.0.
add 5ef637d gnu: r-coverageview: Update to 1.28.0.
add a3e2e53 gnu: r-cummerbund: Update to 2.32.0.
add 70ab990 gnu: r-biocversion: Update to 3.12.0.
add aa311ea gnu: r-biocgenerics: Update to 0.36.0.
add c472549 gnu: r-affycomp: Update to 1.66.0.
add fa2d16c gnu: r-affycompatible: Update to 1.50.0.
add 3e82f9c gnu: r-affycontam: Update to 1.48.0.
add a92219b gnu: r-affycoretools: Update to 1.62.0.
add 8e6a2c3 gnu: r-affxparser: Update to 1.62.0.
add 7d56302 gnu: r-annotate: Update to 1.68.0.
add fa7578b gnu: r-hpar: Update to 1.32.1.
add d1ff360 gnu: r-regioner: Update to 1.22.0.
add c03c763 gnu: r-reportingtools: Update to 2.30.0.
add d72c4c9 gnu: r-geneplotter: Update to 1.68.0.
add 464df5c gnu: r-oligoclasses: Update to 1.52.0.
add 9af6fdf gnu: r-oligo: Update to 1.54.0.
add e9b60a2 gnu: r-qvalue: Update to 2.22.0.
add a0df9b9 gnu: Add r-rcppnumerical.
add 3b399e5 gnu: Add r-apeglm.
add a7f4a8b gnu: Add r-invgamma.
add deda231 gnu: Add r-etrunct.
add 755d16a gnu: Add r-mixsqp.
add c84762c gnu: Add r-ashr.
add 6e396c4 gnu: Add r-greylistchip.
add 341ebaa gnu: r-diffbind: Update to 3.0.7.
add 1e6920c gnu: r-multtest: Update to 2.46.0.
add f519b4d gnu: r-graph: Update to 1.68.0.
add d068d96 gnu: r-chippeakanno: Update to 3.24.0.
add 6e6c627 gnu: r-marray: Update to 1.68.0.
add ee052d0 gnu: r-cghbase: Update to 1.50.0.
add 7240003 gnu: r-cghcall: Update to 2.52.0.
add 3b64840 gnu: r-qdnaseq: Update to 1.26.0.
add 63572b0 gnu: r-bayseq: Update to 2.24.0.
add 03b655c gnu: r-riboprofiling: Update to 1.20.0.
add 3813c9f gnu: r-riboseqr: Update to 1.24.0.
add d27dfbf gnu: r-ctc: Update to 1.64.0.
add c97bcfb gnu: r-goseq: Update to 1.42.0.
add 3dab457 gnu: r-glimma: Update to 2.0.0.
add 0ef40b2 gnu: r-rots: Update to 1.18.0.
add 1c9bdfc gnu: r-plgem: Update to 1.62.0.
add 41d6b41 gnu: r-inspect: Update to 1.20.0.
add 874a774 gnu: r-dnabarcodes: Update to 1.20.0.
add a55b162 gnu: r-ruvseq: Update to 1.24.0.
add bbae34a gnu: r-biocneighbors: Update to 1.8.0.
add 4217307 gnu: r-destiny: Update to 3.4.0.
add 967fc58 gnu: r-savr: Update to 1.28.0.
add ff4d080 gnu: r-chipexoqual: Update to 1.14.0.
add 43d8db0 gnu: r-copynumber: Update to 1.30.0.
add 850f4c2 gnu: r-dnacopy: Update to 1.64.0.
add 939c888 gnu: r-ebseq: Update to 1.30.0.
add 37da451 gnu: r-karyoploter: Update to 1.16.0.
add 378d67c gnu: r-lpsymphony: Update to 1.18.0.
add 95b1f35 gnu: r-ihw: Update to 1.18.0.
add e26b5ee gnu: r-icobra: Update to 1.18.0.
add 532b106 gnu: r-mast: Update to 1.16.0.
add 38bc0bf gnu: r-monocle: Update to 2.18.0.
add 8396c45 gnu: r-noiseq: Update to 2.34.0.
add bde9dc5 gnu: r-scone: Update to 1.14.0.
add 5c4edee gnu: r-geoquery: Update to 2.58.0.
add e89966e gnu: r-illuminaio: Update to 0.32.0.
add 0fd830f gnu: r-siggenes: Update to 1.64.0.
add 50c5fee gnu: r-bumphunter: Update to 1.32.0.
add 37e0961 gnu: r-linnorm: Update to 2.14.0.
add 2a1a6d7 gnu: r-ioniser: Update to 2.14.0.
add 67837d4 gnu: r-varianttools: Update to 1.32.0.
add 9813d24 gnu: r-heatplus: Update to 2.36.0.
add b2084e4 gnu: r-gosemsim: Update to 2.16.1.
add 33c905b gnu: r-anota: Update to 1.38.0.
add 7dabc62 gnu: r-sigpathway: Update to 1.58.0.
add d68a9ff gnu: r-fgsea: Update to 1.16.0.
add aeb1d56 gnu: r-dose: Update to 3.16.0.
add b7d1ea7 gnu: Add r-shadowtext.
add eb3d17e gnu: r-enrichplot: Update to 1.10.1.
add 3fd84a4 gnu: r-clusterprofiler: Update to 3.18.0.
add 4f82931 gnu: r-mlinterfaces: Update to 1.70.0.
add c47a8cd gnu: r-a4core: Update to 1.38.0.
add fa51705 gnu: r-a4classif: Update to 1.38.0.
add 85155e2 gnu: r-a4preproc: Update to 1.38.0.
add 2fb8298 gnu: r-a4reporting: Update to 1.38.0.
add 564d427 gnu: r-a4base: Update to 1.38.0.
add 68efaaf gnu: r-a4: Update to 1.38.0.
add 8816139 gnu: r-abseqr: Update to 1.8.0.
add d5dcf1b gnu: r-bacon: Update to 1.18.0.
add 41071ed gnu: r-rgadem: Update to 2.38.0.
add a2bae16 gnu: r-motifdb: Update to 1.32.0.
add 301e549 gnu: r-motifbreakr: Update to 2.4.0.
add 4b4cd2b gnu: r-motifstack: Update to 1.34.0.
add 3928061 gnu: r-genomicscores: Update to 2.2.0.
add 2ba61c6 gnu: r-atacseqqc: Update to 1.14.4.
add c3b69d6 gnu: r-gofuncr: Update to 1.10.0.
add 8a7f711 gnu: r-abaenrichment: Update to 1.20.0.
add bc12a4b gnu: r-annotationfuncs: Update to 1.40.0.
add 5779154 gnu: r-annotationtools: Update to 1.64.0.
add 85c6636 gnu: r-allelicimbalance: Update to 1.28.0.
add ff8b915 gnu: r-aucell: Update to 1.12.0.
add ba0bf98 gnu: r-ebimage: Update to 4.32.0.
add 65ba4ba gnu: r-yamss: Update to 1.16.0.
add 0836ef6 gnu: r-gtrellis: Update to 1.22.0.
add 36f3a19 gnu: r-somaticsignatures: Update to 2.26.0.
add 3d41f0c gnu: r-gcrma: Update to 2.62.0.
add 48aaef2 gnu: r-simpleaffy: Update to 2.66.0.
add 94dee0a gnu: r-yaqcaffy: Update to 1.50.0.
add 72476ad gnu: r-roar: Update to 1.26.0.
add 7f71341 gnu: r-xbseq: Update to 1.22.0.
add f4e19e6 gnu: r-massspecwavelet: Update to 1.56.0.
add 1e536c3 gnu: Update r-msnbase to 2.16.0.
add fa2201c gnu: Add r-mscoreutils.
add a3af40e gnu: r-xcms: Update to 3.12.0.
add dc7c636 gnu: r-wrench: Update to 1.8.0.
add 397bcd2 gnu: r-wiggleplotr: Update to 1.14.0.
add ba53681 gnu: r-widgettools: Update to 1.68.0.
add d176ad3 gnu: r-webbioc: Update to 1.62.0.
add 59fafa1 gnu: r-zfpkm: Update to 1.12.0.
add 9834d1a gnu: r-rbowtie2: Update to 1.12.0.
add d115db7 gnu: r-progeny: Update to 1.12.0.
add 0067589 gnu: r-arrmnormalization: Update to 1.30.0.
add e65e81d gnu: r-biocfilecache: Update to 1.14.0.
add 4bc0675 gnu: r-iclusterplus: Update to 1.26.0.
add ea86d93 gnu: r-rbowtie: Update to 1.30.0.
add ca0271c gnu: r-sgseq: Update to 1.24.0.
add c36d888 gnu: r-rhisat2: Update to 1.6.0.
add 1b4c271 gnu: r-quasr: Update to 1.30.0.
add d8a7bf7 gnu: r-rqc: Update to 1.24.0.
add 979b1ed gnu: r-birewire: Update to 3.22.0.
add e78e04d gnu: r-multidataset: Update to 1.18.0.
add 59daf6e gnu: r-ropls: Update to 1.22.0.
add 26e4170 gnu: r-biosigner: Update to 1.18.0.
add 458aa44 gnu: r-annotatr: Update to 1.16.0.
add d764f1e gnu: r-rsubread: Update to 2.4.2.
add d361222 gnu: r-flowutils: Update to 1.54.0.
add a49024e gnu: r-consensusclusterplus: Update to 1.54.0.
add c6ccd4f gnu: r-cytolib: Update to 2.2.0.
add 3f0e93b gnu: r-flowcore: Update to 2.2.0.
add 2cd7813 gnu: r-flowmeans: Update to 1.50.0.
add eac1eaa gnu: r-ncdfflow: Update to 2.36.0.
add d5a53ab gnu: r-flowviz: Update to 1.54.0.
add 33c5b6d gnu: r-flowclust: Update to 3.28.0.
add 5bab0b7 gnu: r-rprotobuflib: Update to 2.2.0.
add 7f940bd gnu: Add r-aws-signature.
add ffa42c7 gnu: Add r-aws-s3.
add 1b34781 gnu: r-flowworkspace: Update to 4.2.0.
add fd11c7b gnu: r-flowstats: Update to 4.2.0.
add 5abf0a0 gnu: r-opencyto: Update to 2.2.0.
add 63033b1 gnu: r-cytoml: Update to 2.2.1.
add 1f7ddaf gnu: r-flowsom: Update to 1.22.0.
add 0e78ce3 gnu: r-mixomics: Update to 6.14.0.
add fafaeab gnu: r-depecher: Update to 1.6.0.
add 6481357 gnu: r-rcistarget: Update to 1.10.0.
add 7954fe1 gnu: r-cicero: Update to 1.8.0.
add 5d1bd61 gnu: r-genie3: Update to 1.12.0.
add e7b61ba gnu: r-roc: Update to 1.66.0.
add a50779b gnu: r-gdsfmt: Update to 1.26.0.
add 42e00c0 gnu: r-seqbias: Update to 1.38.0.
add 0c53f27 gnu: r-reqon: Update to 1.36.0.
add fd7e23b gnu: r-wavcluster: Update to 2.24.0.
add 87f704b gnu: r-timeseriesexperiment: Update to 1.8.0.
add 45ea773 gnu: r-variantfiltering: Update to 1.26.0.
add 44ecd5f gnu: r-variancepartition: Update to 1.20.0.
add 949626f gnu: r-htqpcr: Update to 1.44.0.
add fa7e242 gnu: r-unifiedwmwqpcr: Update to 1.26.0.
add fad5da3 gnu: r-bgmix: Update to 1.50.0.
add 3cebe27 gnu: r-bgx: Update to 1.56.0.
add 2219bef gnu: r-bhc: Update to 1.42.0.
add 4ec6656 gnu: r-bicare: Update to 1.48.0.
add d57be63 gnu: r-bifet: Update to 1.10.0.
add 3320f04 gnu: r-rsbml: Update to 2.48.0.
add 294fd58 gnu: r-hypergraph: Update to 1.62.0.
add 249b703 gnu: r-hyperdraw: Update to 1.42.0.
add 0f94a9e gnu: r-biggr: Update to 1.26.0.
add e80f826 gnu: r-bigmemoryextras: Update to 1.38.0.
add 1e28867 gnu: r-bigpint: Update to 1.6.0.
add 95ef268 gnu: r-chemminer: Update to 3.42.0.
add 2f36b04 gnu: r-bioassayr: Update to 1.28.0.
add 95e30d8 gnu: r-biobroom: Update to 1.22.0.
add 26224e0 gnu: r-graphite: Update to 1.36.0.
add a4f4a55 gnu: r-reactomepa: Update to 1.34.0.
add b0f3bfe gnu: r-ebarrays: Update to 2.54.0.
add 7dced9a gnu: r-bioccasestudies: Update to 1.52.0.
add abc18fc gnu: r-biocgraph: Update to 1.52.0.
add 49a7285 gnu: r-experimenthub: Update to 1.16.0.
add 13d0b78 gnu: r-multiassayexperiment: Update to 1.16.0.
add e29b15e gnu: r-bioconcotk: Update to 1.10.0.
add 072f722 gnu: r-biocor: Update to 1.14.0.
add 6a5d8ca gnu: r-biocpkgtools: Update to 1.8.0.
add ff4834c gnu: Add r-biocio.
add feb0cbf gnu: r-biocset: Update to 1.4.0.
add 7891c83 gnu: r-biocworkflowtools: Update to 1.16.0.
add 15be98c gnu: r-biodist: Update to 1.62.0.
add 7a24204 gnu: r-rgreat: Update to 1.22.0.
add 126846a gnu: r-m3c: Update to 1.12.0.
add 3cacc3b gnu: r-icens: Update to 1.62.0.
add e5b2c80 gnu: r-fourcseq: Update to 1.24.0.
add 8fa30df gnu: r-preprocesscore: Update to 1.52.0.
add b6348b0 gnu: r-rgraphviz: Update to 2.34.0.
add 724b770 gnu: r-xvector: Update to 0.30.0.
add 7105658 gnu: r-fithic: Update to 1.16.0.
add ed44a72 gnu: r-hitc: Update to 1.34.0.
add 5782047 gnu: r-s4vectors: Update to 0.28.0.
add cf6033e gnu: r-iranges: Update to 2.24.0.
add 47f6fd8 gnu: Add r-ggalluvial.
add c8da013 gnu: Add r-matrixgenerics.
add fafa94b gnu: r-delayedarray: Update to 0.16.0.
add 5992c25 gnu: r-hdf5array: Update to 1.18.0.
add 79cb6af gnu: r-rhdf5lib: Update to 1.12.0.
add c5ae5c1 gnu: r-rhdf5lib: Fix build.
add b58c4e7 gnu: r-cytolib: Fix r-rhdf5libs linking.
add 26cf5eb gnu: r-hdf5array: Fix r-rhdf5libs linking.
add ece564f gnu: r-flowworkspace: Fix r-rhdf5libs linking.
add 2b224f9 gnu: r-cytoml: Fix r-rhdf5libs linking.
add 0022e9f gnu: r-ncdfflow: Fix r-rhdf5libs link.
add fe4ce29 gnu: r-beachmat: Update to 2.6.1.
add 64cf667 gnu: r-genefilter: Update to 1.72.0.
add 936227f gnu: r-deseq2: Update to 1.30.0.
add a323c1e gnu: r-dexseq: Update to 1.36.0.
add 4451918 gnu: r-annotationforge: Update to 1.32.0.
add 7a57b22 gnu: r-rbgl: Update to 1.66.0.
add 03312f0 gnu: r-gseabase: Update to 1.52.0.
add afbc8e1 gnu: r-category: Update to 2.56.0.
add 74204b4 gnu: r-gostats: Update to 2.56.0.
add a05bb42 gnu: r-shortread: Update to 1.48.0.
add 5598f53 gnu: r-systempiper: Update to 1.24.2.
add 16a4822 gnu: r-grohmm: Update to 1.24.0.
add 182a080 gnu: r-biocviews: Update to 1.58.0.
add 1160c83 gnu: r-biocstyle: Update to 2.18.0.
add 2ae3b7d gnu: r-bioccheck: Update to 1.26.0.
add cde7fce gnu: r-genomeinfodb: Update to 1.26.0.
add 5996929 gnu: r-edger: Update to 3.32.0.
add d972ab6 gnu: r-limma: Update to 3.46.0.
add 7641dba gnu: r-genomicranges: Update to 1.42.0.
add 9103041 gnu: r-biobase: Update to 2.50.0.
add f517365 gnu: r-annotationdbi: Update to 1.52.0.
add 4fac3fe gnu: r-biomart: Update to 2.46.0.
add 444b101 gnu: r-biocparallel: Update to 1.24.1.
add 5d60273 gnu: r-biostrings: Update to 2.58.0.
add 9168ab0 gnu: r-rsamtools: Update to 2.6.0.
add 8607a53 gnu: r-summarizedexperiment: Update to 1.20.0.
add 3ca5b05 gnu: r-variantannotation: Update to 1.36.0.
add 077e813 gnu: r-genomicalignments: Update to 1.26.0.
add 92377e7 gnu: r-rtracklayer: Update to 1.50.0.
add 26e2184 gnu: r-genomicfeatures: Update to 1.42.1.
add 6a7de43 gnu: r-topgo: Update to 2.42.0.
add e2e11f0 gnu: r-bsgenome: Update to 1.58.0.
add a180744 gnu: r-impute: Update to 1.64.0.
add 44bf116 gnu: r-seqpattern: Update to 1.22.0.
add 2a70c96 gnu: r-genomation: Update to 1.22.0.
add 329879b gnu: r-seqlogo: Update to 1.56.0.
add b0d85e3 gnu: r-zlibbioc: Update to 1.36.0.
add 7283696 gnu: r-rhtslib: Update to 1.22.0.
add 2c15a1c gnu: r-bamsignals: Update to 1.22.0.
add a823a74 gnu: r-rcas: Update to 1.16.0.
add 6d5a4dd gnu: r-mutationalpatterns: Update to 3.0.1.
add ec0050c gnu: r-tximport: Update to 1.18.0.
add cad3eb4 gnu: r-annotationfilter: Update to 1.14.0.
add 36fd725 gnu: r-chipseq: Update to 1.40.0.
add 2ed79a0 gnu: r-copywriter: Update to 2.22.0.
add 99bd4f2 gnu: r-methylkit: Update to 1.16.0.
add 858eb98 gnu: r-sva: Update to 3.38.0.
add 4d9e168 gnu: r-protgenerics: Update to 1.22.0.
add badb467 gnu: r-mzr: Update to 2.24.1.
add 471ceb5 gnu: r-mzr: Fix linking.
add d6750c6 gnu: r-affyio: Update to 1.60.0.
add 6a6f38b gnu: r-affy: Update to 1.68.0.
add 75bdab8 gnu: r-vsn: Update to 3.58.0.
add b47560c gnu: r-mzid: Update to 1.28.0.
add 2ed937e gnu: r-pcamethods: Update to 1.82.0.
add e520c68 gnu: Add r-msmseda.
add 16f16b5 gnu: Add r-msmstests.
add 971f3a3 gnu: r-msnid: Update to 1.24.0.
add 8db8a68 gnu: r-aroma-light: Update to 3.20.0.
add 8e55b9f gnu: r-edaseq: Update to 2.24.0.
add 3becce3 gnu: r-interactivedisplaybase: Update to 1.28.0.
add a9dc755 gnu: r-annotationhub: Update to 2.22.0.
add b6dd072 gnu: r-fastseg: Update to 1.36.0.
add 143437c gnu: r-keggrest: Update to 1.30.0.
add 78cadd0 gnu: r-gage: Update to 2.40.0.
add 0fde2f9 gnu: r-genomicfiles: Update to 1.26.0.
add 4ef1e37 gnu: r-complexheatmap: Update to 2.6.2.
add 8962a13 gnu: r-dirichletmultinomial: Update to 1.32.0.
add 06fe3b7 gnu: r-ensembldb: Update to 2.14.0.
add 6e182c2 gnu: r-organismdbi: Update to 1.32.0.
add 3c6eecd gnu: r-biovizbase: Update to 1.38.0.
add 74a11b2 gnu: r-ggbio: Update to 1.38.0.
add 6e33890 gnu: r-snpstats: Update to 1.40.0.
add 494010a gnu: r-erma: Update to 1.6.0.
add 0a8d08e gnu: r-ldblock: Update to 1.20.0.
add 717e53f gnu: r-gviz: Update to 1.34.0.
add 83129ed gnu: r-gwascat: Update to 2.22.0.
add e707820 gnu: r-sushi: Update to 1.28.0.
add aca4ebe gnu: r-annaffy: Update to 1.62.0.
add a23310f gnu: Add r-bluster.
add 5e71998 gnu: Add r-sparsematrixstats.
add 60ad3c7 gnu: r-genomationdata: Update to 1.22.0.
add 35dae95 gnu: r-interactionset: Update to 1.18.0.
add dd9341f gnu: r-genomicinteractions: Update to 1.24.0.
add 798ec28 gnu: r-biocsingular: Update to 1.6.0.
add d0db04f gnu: r-yapsa: Update to 1.16.0.
add 4ef898d gnu: r-singlecellexperiment: Update to 1.12.0.
add 86fccee gnu: Add r-rhdf5filters.
add 53affb3 gnu: r-rhdf5: Update to 2.34.0.
add 10c87ec gnu: r-delayedmatrixstats: Update to 1.12.0.
add 0e60dda gnu: Add r-scuttle.
add d4b5d18 gnu: r-scater: Update to 1.18.3.
add b03c955 gnu: r-scran: Update to 1.18.0.
add 9709842 gnu: r-biocviews: Update to 1.58.1.
add 1174317 gnu: r-pcatools: Update to 2.2.0.
add 3f04b81 gnu: r-chipcomp: Update to 1.20.0.
add b856a48 gnu: r-scdd: Update to 1.14.0.
add 43bf50e gnu: r-ggcyto: Update to 1.18.0.
add 45dfb75 gnu: Add r-catalyst.
add e5a4198 gnu: r-minfi: Update to 1.36.0.
add 0b7dd44 gnu: r-methylumi: Update to 2.36.0.
add 4eeaa15 gnu: r-lumi: Update to 2.42.0.
add adf6edc gnu: r-quantro: Update to 1.24.0.
add 8db36c1 gnu: r-yarn: Update to 1.16.0.
add 9f6e2bf gnu: r-watermelon: Update to 1.34.0.
add 64f9fb3 gnu: r-bigmelon: Update to 1.16.0.
add 6a48187 gnu: r-gqtlbase: Update to 1.21.1.
add cde035e gnu: r-gqtlstats: Update to 1.21.3.
add 7601015 gnu: r-delayedmatrixstats: Update to 1.12.1.
add 4617cc7 gnu: r-rhtslib: Propagate zlib.
add ebf11de gnu: r-diffbind: Update to 3.0.8.
add 59a6780 services: avahi: Depend on 'user-processes'.
add f066e65 services: guix-publish: Depend on 'avahi-daemon' when needed.
add 69a0440 doc: Document 'advertise?' for 'guix-publish-configuration'.
add 3d85c3e gnu: pciutils: Fix compilation error on GNU/Hurd.
add 5103459 gnu: emacs-debbugs: Update to 0.27.
add a294eec gnu: Add emacs-helm-switch-to-repl.
add 44308c8 gnu: Add libzim.
add acbf47a gnu: Add kiwix-lib.
add 5f6a001 gnu: Add kiwix-desktop.
add e36291e gnu: Add r-restrserve.
add 2a23e3f gnu: dealii: Update to 9.2.0.
add eaca440 gnu: python-llfuse: Update to 1.3.8.
add bd5f751 gnu: Add r-brio.
add 24cf213 gnu: Add r-diffobj.
add 71a732c gnu: Add r-waldo.
add 9c3f5b2 gnu: Add r-gitcreds.
add 73545fd gnu: Add r-parallelly.
add feb7c4f gnu: Add r-ash.
add 14caba7 gnu: Add r-hdrcde.
add 6279d2b gnu: Add r-rainbow.
add f0862a3 gnu: Add r-fds.
add 8d15940 gnu: Add r-gamm4.
add fab4966 gnu: Add r-optimx.
add d106e3e gnu: Add r-projpred.
add 18ddbd4 gnu: r-d3r: Update to 0.9.1.
add 6c148ea import/utils: Fix conditional.
add 00a275f gnu: r-magrittr: Update to 2.0.1.
add 3e337d9 gnu: r-rticles: Update to 0.17.
add d856813 gnu: r-v8: Update to 3.4.0.
add 17fa095 gnu: r-ggalluvial: Update to 0.12.3.
add 9bf316f gnu: r-ggpmisc: Update to 0.3.7.
add 2b1abb4 gnu: r-vegan: Update to 2.5-7.
add 0415a46 gnu: r-shinyfiles: Update to 0.9.0.
add 327167b gnu: r-colorspace: Update to 2.0-0.
add b1ad80e gnu: r-ps: Update to 1.5.0.
add bd69b54 gnu: r-circlize: Update to 0.4.11.
add 07cb317 gnu: r-distillery: Update to 1.2.
add 882d699 gnu: r-extremes: Update to 2.1.
add 89088dc gnu: r-inline: Update to 0.3.17.
add 54dd6ce gnu: r-fitdistrplus: Update to 1.1-3.
add 1d8b531 gnu: r-lava: Update to 1.6.8.1.
add 9597dc0 gnu: r-generics: Update to 0.1.0.
add cfd8779 gnu: r-recipes: Update to 0.1.15.
add 55a090d gnu: r-mice: Update to 3.12.0.
add 841c3ed gnu: r-hardyweinberg: Update to 1.6.9.
add 86572c3 gnu: r-cli: Update to 2.2.0.
add d4e67f3 gnu: r-processx: Update to 3.4.5.
add bb70fae gnu: r-vctrs: Update to 0.3.5.
add e0c8fc4 gnu: r-pillar: Update to 1.4.7.
add d2be197 gnu: r-tinytex: Update to 0.27.
add 514848a gnu: r-ifultools: Update to 2.0-22.
add 114a0fb gnu: r-quantmod: Update to 0.4.18.
add e836f28 gnu: r-tseries: Update to 0.10-48.
add 964d8a8 gnu: r-radiant-data: Update to 1.3.12.
add df6c02d gnu: r-renv: Update to 0.12.3.
add bc08f4f gnu: r-rbibutils: Update to 2.0.
add e0c6ecf gnu: r-rdpack: Update to 2.1.
add 624d388 gnu: r-officer: Update to 0.3.15.
add 2ed2e1d gnu: r-insight: Update to 0.11.1.
add 7b5443d gnu: r-flextable: Update to 0.6.1.
add f836bc8 gnu: r-doby: Update to 4.6.8.
add e99a124 gnu: r-blockfest: Update to 1.8.
add 925b72f gnu: r-slam: Update to 0.1-48.
add f76cc34 gnu: r-raster: Update to 3.4-5.
add e0ba249 gnu: r-magick: Update to 2.5.2.
add 2424da9 gnu: r-multcomp: Update to 1.4-15.
add 2c9a5c0 gnu: r-bayestestr: Update to 0.8.0.
add 5af35b3 gnu: r-performance: Update to 0.6.0.
add 620c01b gnu: r-ggeffects: Update to 1.0.0.
add 2ccaac5 gnu: r-effectsize: Update to 0.4.1.
add 5f68a11 gnu: r-gh: Update to 1.2.0.
add a2a6466 gnu: r-rcppannoy: Update to 0.0.17.
add 7fc054b gnu: r-tiff: Update to 0.1-6.
add 7e205be gnu: r-tm: Update to 0.7-8.
add c148d5a gnu: r-flare: Update to 1.7.0.
add 68b720e gnu: r-rnifti: Update to 1.3.0.
add 319a408 gnu: r-rmpfr: Update to 0.8-2.
add c91d1a7 gnu: r-epi: Update to 2.42.
add d1d42fa gnu: r-globals: Update to 0.14.0.
add bb9e686 gnu: r-future: Update to 1.20.1.
add d5204d6 gnu: r-tensora: Update to 0.36.2.
add e3d0662 gnu: r-deldir: Update to 0.2-3.
add 77eb821 gnu: r-rms: Update to 6.1-0.
add 91e1961 gnu: r-ggraph: Update to 2.0.4.
add a80b912 gnu: r-ggvis: Update to 0.4.7.
add c1ba4ad gnu: r-clue: Update to 0.3-58.
add 9b398a0 gnu: r-dae: Update to 3.1-32.
add 8d459d2 gnu: r-refmanager: Update to 1.3.0.
add e458d7b gnu: r-umap: Update to 0.2.7.0.
add b71e934 gnu: r-uwot: Update to 0.1.9.
add 010deb2 gnu: r-leiden: Update to 0.3.6.
add 2213fe7 gnu: r-patchwork: Update to 1.1.0.
add af3385c gnu: r-parameters: Update to 0.10.1.
add 98d69d6 gnu: r-sysfonts: Update to 0.8.2.
add 6ad24c2 gnu: r-showtext: Update to 0.9-1.
add 3e44c41 gnu: r-abtest: Update to 0.2.2.
add b937197 gnu: r-r-filesets: Update to 2.14.0.
add 5a4b3d6 gnu: r-fda: Update to 5.1.7.
add cdbe38c gnu: r-isocodes: Update to 2020.12.04.
add fccc5ac gnu: r-stopwords: Update to 2.1.
add b192303 gnu: r-loo: Update to 2.4.0.
add 2847297 gnu: r-isoband: Update to 0.2.3.
add f694850 gnu: r-brms: Update to 2.14.4.
add aa486bb gnu: r-hardhat: Update to 0.1.5.
add 80a279b gnu: r-spatstat-data: Update to 1.5-2.
add 94ebe64 gnu: r-cpp11: Update to 0.2.4.
add 29ebaf0 gnu: r-tune: Update to 0.1.2.
add 48504a2 gnu: r-tidymodels: Update to 0.1.2.
add 1f2ceac gnu: r-diversitree: Update to 0.9-15.
add 5977164 gnu: r-codetools: Update to 0.2-18.
add ff34dbb gnu: r-testthat: Update to 3.0.0.
add 0bc87a5 gnu: r-rlang: Update to 0.4.9.
add 348c21e gnu: r-dbplyr: Update to 2.0.0.
add aed99e0 gnu: r-data-table: Update to 1.13.4.
add e4ce584 gnu: r-backports: Update to 1.2.0.
add 48af6aa gnu: r-rstudioapi: Update to 0.13.
add da29023 gnu: r-rcpparmadillo: Update to 0.10.1.2.0.
add 5d0ccf8 gnu: r-rprojroot: Update to 2.0.2.
add 3ffc551 gnu: r-hmisc: Update to 4.4-2.
add 31a6a60 gnu: r-gplots: Update to 3.1.1.
add 61d2417 gnu: r-mclust: Update to 5.4.7.
add d6d2984 gnu: r-fpc: Update to 2.2-9.
add d0c7b9f gnu: r-lme4: Update to 1.1-26.
add 52e14cb gnu: r-lubridate: Update to 1.7.9.2.
add 371ba7b guix: Add globstar support.
add 4714787 gnu: r-biocneighbors: Update to 1.8.2.
add 7cda2d4 gnu: r-biosigner: Update to 1.18.2.
add 589ac42 gnu: r-cicero: Update to 1.8.1.
add eed7289 gnu: r-beachmat: Update to 2.6.2.
add 3872153 gnu: r-scuttle: Update to 1.0.3.
add baeaa02 gnu: r-biocstyle: Update to 2.18.1.
add 4745f0d gnu: r-genomeinfodb: Update to 1.26.2.
add 48f77ec gnu: r-keggrest: Update to 1.30.1.
add 15c4e13 gnu: Remove Attic.
add ec2eccb gnu: Remove python-llfuse-0.41.
add 11456ba gnu: emacs-chess: Update to 2.0.5.
add 1781d35 gnu: emacs-dash-docs: Update to 1.4.0-2.dafc8fc.
add ef24052 gnu: Add emacs-org-pretty-table.
add 38b05e7 gnu: emacs-company-emoji: Update to 2.6.0.
add 71dd1be gnu: emacs-lsp-ivy: Update to 0.4.
add 0faef87 avahi: Ignore local services.
add 3fdb01f gnu: guile-prometheus: Update to 0-4.f661edf.
add 8e344e3 gnu: singularity: Update command substitutions.
add 793713d gnu: exim: Enable authenticators.
add 3138e4a gnu: stumpwm-with-slynk: Fix build error.
add d4e3527 gnu: visidata: Update to 2.1.
add 6409843 gnu: nfs-utils: Fix location of external util-linux binaries.
add 77667e2 gnu: guile-prometheus: Update to 0-5.35dc26c.
add 73817f7 gnu: qoauth: Fix wrong URL in comment.
add d677f3d etc: Add more SELinux permissions for the daemon.
add e530fb4 gnu: Add virtaal.
add f3bfeef gnu: Add emacs-smart-hungry-delete.
add 72e3614 gnu: emacs-elpher: Mention gemini in synopsis and description.
add f765577 gnu: Add emacs-webpaste.
add 8f330ae gnu: busybox: Update to 1.32.0.
add f769ad1 gnu: toybox: Cross compile.
add 2639a99 gnu: fcitx5-lua: Remove stale build steps.
add 91e35e3 gnu: fcitx5-chinese-addons: Remove stale build steps.
add edc2acb gnu: guile-simple-zmq: Update to 0.0.0-5.f8b7d81.
add dbdae9f maint: Avoid macros obsolete in Autoconf 2.70.
add 26b1030 maint: Remove unused 'NIX_VERSION' macro.
add d805155 Revert "services: openssh: Warn about
'password-authentication?' default."
add fd24754 build: 'script/guix' uses our own 'guile' executable.
add 459f0d0 self: Move Guile early in the module search path.
add d20665e guix: 'guile' executable ignores GUILE_LOAD_PATH during
startup.
add 41d01b4 self: Remove the empty string from '%load-extensions'.
add 382e0fe gnu: Add hsetroot.
add eee3af8 gnu: esbuild: Update to 0.8.21.
add 4a084c7 gnu: Add simple-neural-network.
add 6e301c3 gnu: sbcl-geco: Update to 2.1.1.
add 703cdbb gnu: Add cl-autowrap.
add 2ae3033 gnu: Add cl-abnf.
add 6ca66f6 gnu: ecl-lparallel: Disable never ending tests.
add 8361817 install: Discover local substitute servers.
add 7eb9203 gnu: knot-resolver: Update to 5.2.1.
add 482b8ae import/cran: Abort with error message when recursive import
fails.
add 6718ce4 news: Add 'es' translation.
add 92d99bf gnu: linux-libre: Update to 5.9.14.
add 0fae079 gnu: linux-libre 5.4: Update to 5.4.83.
add a3a81a8 gnu: linux-libre 4.19: Update to 4.19.163.
add 4c327e0 gnu: linux-libre 4.14: Update to 4.14.212.
add b7b9ee7 gnu: linux-libre 4.9: Update to 4.9.248.
add ea50795 gnu: linux-libre 4.4: Update to 4.4.248.
add b828057 gnu: KDE: Fix old cgit home-pages.
add 2a951e8 gnu: pygame-sdl2-for-renpy: Drop generated sources in snippet.
add 1592491 gnu: renpy: Use system fribidi and drop generated sources.
add 6760578 gnu: GnuCash: Update to 4.2.
add f98e3ad gnu: emacs-guix: Update to 0.5.2.3-a694fdb.
add b52d37d gnu: synapse: Update to 1.24.0.
add f49746c gnu: Add wlr-randr
add f53c100 gnu: Add guile-sodium.
add 208cb96 gnu: Add guile-eris.
add 18de9e3 gnu: r-rmarkdown: Add missing propagated input.
add f765b88 gnu: gnucash: Make SWIG a native input.
add 853c579 gnu: emacs-fountain-mode: Update to 3.3.3.
add 7ae66d9 gnu: python-onnx: Update to 1.8.0.
add 5f40ad9 gnu: sleef: Update to 3.5.1.
add 4060df2 gnu: python-parse: Update to 1.18.0.
add 036df74 gnu: emacs-list-utils: Suppress warning "Package cl is
deprecated".
add e799da3 gnu: emacs-bluetooth: Add dbus to inputs
add e1da617 gnu: libredwg: Update to 0.11.1.
add 3a87b29 gnu: Add rust-hashbrown-0.1.
add cd0ce4a gnu: Add rust-escargot-0.3.
add 14819a7 gnu: Add rust-predicates-core-0.9.
add aa2da2a gnu: Add rust-predicates-tree-0.9.
add eb6064a gnu: Add rust-normalize-line-endings-0.2.
add 05bec9f gnu: Add rust-predicates-0.9.
add 3faab12 gnu: Add rust-assert-cmd-0.9.
add 9bc75a2 gnu: Add rust-automod-1.
add 46ab6c4 gnu: Add rust-bincode-0.8.
add 44d233d gnu: Add rust-bindgen-0.46.
add 4964b17 gnu: Add rust-cachedir-0.1.
add fb7f184 gnu: Add rust-cfg-if-1.
add 24e6f5a gnu: rust-chrono-0.4: Update to 0.4.19.
add 5ef65f0 gnu: rust-derive-more-0.99: Update to 0.99.11.
add 799a91f gnu: Add rust-dirs-sys-next-0.1.
add 70f3d89 gnu: Add rust-dirs-next-1.
add f431cad gnu: Add rust-directories-next-1.
add 59eb35f gnu: Add rust-exitfailure-0.5.
add 33b11ea gnu: Add rust-float-cmp-0.4.
add 95f55fe gnu: Add rust-pure-rust-locales-0.5.
add bc49b00 gnu: python-httpx: Update to 0.16.1.
add f334033 gnu: setzer: Update to 0.3.8.
add 18918eb gnu: Add openfortivpn
add 8f2656f services: pcscd-shepherd-service: Fix PID file location.
add 4c9a407 gnu: Add ebook-tools.
add 7a8d455 gnu: Add kdegraphics-mobipocket.
add fdfa25e gnu: Add libkexiv2.
add 0313617 gnu: veusz: Update to 3.3.1.
add a4cd86f gnu: htop: Update to 3.0.3.
add 593b3a9 gnu: youtube-dl: Update to 2020.12.12.
add 9faee1e gnu: openntpd: Update to 6.8p1.
add 4de58a4 download: Update ImageMagick mirror list.
add 9e78ec5 gnu: multipath-tools: Use the latest json-c.
add 38438ea gnu: Remove python2-babel@2.6.
add ddeec8c gnu: postgresql: Add 13.1.
add 1adeb74 gnu: cURL: Update replacement to 7.74.0 [security fixes].
new a7737f0 Merge branch 'master' into ungrafting
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 1 +
config-daemon.ac | 3 +-
configure.ac | 12 +-
doc/guix.texi | 30 +
etc/guix-daemon.cil.in | 4 +-
etc/news.scm | 26 +-
gnu/installer.scm | 7 +
gnu/installer/newt.scm | 5 +
gnu/installer/newt/substitutes.scm | 43 +
gnu/installer/proxy.scm | 6 +-
gnu/installer/record.scm | 3 +
gnu/installer/services.scm | 8 +-
gnu/installer/{proxy.scm => substitutes.scm} | 20 +-
gnu/installer/utils.scm | 11 +-
gnu/local.mk | 8 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/autotools.scm | 35 +-
gnu/packages/aux-files/guile-launcher.c | 46 +-
gnu/packages/backup.scm | 44 -
gnu/packages/bioconductor.scm | 1383 +++++++++++++-------
gnu/packages/bioinformatics.scm | 478 ++++---
gnu/packages/busybox.scm | 16 +-
gnu/packages/ci.scm | 8 +-
gnu/packages/cran.scm | 939 ++++++++++---
gnu/packages/crates-io.scm | 446 ++++++-
gnu/packages/curl.scm | 14 +
gnu/packages/databases.scm | 12 +
gnu/packages/dns.scm | 7 +-
gnu/packages/ebook.scm | 28 +
gnu/packages/emacs-xyz.scm | 211 ++-
gnu/packages/engineering.scm | 7 +-
gnu/packages/fcitx5.scm | 450 +++++++
gnu/packages/finance.scm | 8 +-
gnu/packages/game-development.scm | 35 +-
gnu/packages/gimp.scm | 4 +-
gnu/packages/gnome.scm | 4 +-
gnu/packages/gnucash.scm | 18 +-
gnu/packages/golang.scm | 82 ++
gnu/packages/guile-xyz.scm | 76 +-
gnu/packages/image.scm | 63 +
gnu/packages/kde-frameworks.scm | 2 +-
gnu/packages/kde-internet.scm | 4 +-
gnu/packages/kde-multimedia.scm | 4 +-
gnu/packages/kde-pim.scm | 30 +-
gnu/packages/kde-plasma.scm | 4 +-
gnu/packages/kde.scm | 51 +-
gnu/packages/linux.scm | 44 +-
gnu/packages/lisp-xyz.scm | 136 +-
gnu/packages/machine-learning.scm | 4 +-
gnu/packages/mail.scm | 11 +-
gnu/packages/maths.scm | 12 +-
gnu/packages/matrix.scm | 4 +-
gnu/packages/nfs.scm | 5 +-
gnu/packages/ntp.scm | 4 +-
gnu/packages/ocaml.scm | 16 +-
gnu/packages/package-management.scm | 6 +-
.../busybox-1.31.1-fix-build-with-glibc-2.31.patch | 68 -
.../knot-resolver-fix-map-command-on-32-bit.patch | 146 ---
gnu/packages/patches/pciutils-hurd-fix.patch | 23 +
.../patches/renpy-use-system-fribidi.patch | 52 +
.../patches/sbcl-geco-fix-organism-class.patch | 13 -
gnu/packages/pciutils.scm | 15 +-
gnu/packages/python-web.scm | 4 +-
gnu/packages/python-xyz.scm | 38 +-
gnu/packages/ruby.scm | 4 +-
gnu/packages/statistics.scm | 92 +-
gnu/packages/text-editors.scm | 41 +
gnu/packages/video.scm | 4 +-
gnu/packages/visidata.scm | 4 +-
gnu/packages/vpn.scm | 29 +
gnu/packages/web.scm | 157 ++-
gnu/packages/wm.scm | 71 +
gnu/packages/xdisorg.scm | 41 +
gnu/services/avahi.scm | 4 +-
gnu/services/base.scm | 4 +-
gnu/services/cuirass.scm | 4 +
gnu/services/science.scm | 18 +
gnu/services/security-token.scm | 3 +-
gnu/services/ssh.scm | 18 +-
gnu/system/install.scm | 6 +
guix/avahi.scm | 9 +-
guix/build-system/r.scm | 2 +-
guix/download.scm | 21 +-
guix/glob.scm | 15 +
guix/http-client.scm | 12 +-
guix/import/cran.scm | 10 +-
guix/import/opam.scm | 58 +-
guix/import/utils.scm | 4 +-
guix/progress.scm | 8 +-
guix/scripts/import/cran.scm | 9 +-
guix/scripts/import/opam.scm | 10 +-
guix/scripts/substitute.scm | 253 ++--
guix/self.scm | 26 +-
guix/store/database.scm | 2 -
m4/guix.m4 | 4 +-
nix/libstore/build.cc | 173 +--
nix/libstore/local-store.cc | 170 +--
nix/libstore/local-store.hh | 25 +-
nix/libutil/util.cc | 6 +-
nix/libutil/util.hh | 7 +-
po/guix/POTFILES.in | 1 +
scripts/guix.in | 2 +-
tests/glob.scm | 8 +-
tests/opam.scm | 67 +-
tests/substitute.scm | 98 +-
105 files changed, 4868 insertions(+), 1933 deletions(-)
create mode 100644 gnu/installer/newt/substitutes.scm
copy gnu/installer/{proxy.scm => substitutes.scm} (75%)
create mode 100644 gnu/packages/fcitx5.scm
delete mode 100644
gnu/packages/patches/busybox-1.31.1-fix-build-with-glibc-2.31.patch
delete mode 100644
gnu/packages/patches/knot-resolver-fix-map-command-on-32-bit.patch
create mode 100644 gnu/packages/patches/pciutils-hurd-fix.patch
create mode 100644 gnu/packages/patches/renpy-use-system-fribidi.patch
delete mode 100644 gnu/packages/patches/sbcl-geco-fix-organism-class.patch
- branch ungrafting updated (ba47c83 -> a7737f0),
guix-commits <=