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28/131: gnu: python-scanpy: Do not set PYTHONPATH.
From: |
guix-commits |
Subject: |
28/131: gnu: python-scanpy: Do not set PYTHONPATH. |
Date: |
Mon, 1 Feb 2021 11:56:38 -0500 (EST) |
apteryx pushed a commit to branch core-updates
in repository guix.
commit 21ce20bd2f31a016a7f777c165e9ac11848e5f0b
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Fri Jan 22 16:25:56 2021 -0500
gnu: python-scanpy: Do not set PYTHONPATH.
* gnu/packages/bioinformatics.scm (python-scanpy)[phases]
{check}: Do not set PYTHONPATH.
---
gnu/packages/bioinformatics.scm | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9bc2bb8..f3cdcc4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12924,11 +12924,7 @@ in RNA-seq data.")
(delete-file "scanpy/tests/test_preprocessing.py")
(delete-file "scanpy/tests/test_read_10x.py")
- (setenv "PYTHONPATH"
- (string-append (getcwd) ":"
- (getenv "PYTHONPATH")))
- (invoke "pytest")
- #t)))))
+ (invoke "pytest"))))))
(propagated-inputs
`(("python-anndata" ,python-anndata)
("python-h5py" ,python-h5py)
- 26/131: gnu: bamm: Update following changes to the Python build system., (continued)
- 26/131: gnu: bamm: Update following changes to the Python build system., guix-commits, 2021/02/01
- 25/131: gnu: python-pysam: Adjust following Python build system changes., guix-commits, 2021/02/01
- 03/131: build/python: Always add the install prefix to the Guix PYTHONPATH., guix-commits, 2021/02/01
- 02/131: build/python: Replace PYTHONPATH by GUIX_PYTHONPATH., guix-commits, 2021/02/01
- 08/131: gnu: python-fixtures-bootstrap: Do not sanity check., guix-commits, 2021/02/01
- 10/131: gnu: python-pyfakefs: Disable unreliable test, guix-commits, 2021/02/01
- 17/131: gnu: python-automat: Remove broken console script., guix-commits, 2021/02/01
- 14/131: gnu: python-traitlets: Add missing input., guix-commits, 2021/02/01
- 20/131: gnu: python2-packaging-bootstrap: Add missing dependency, guix-commits, 2021/02/01
- 27/131: gnu: python-screed: Adjust following Python build system changes., guix-commits, 2021/02/01
- 28/131: gnu: python-scanpy: Do not set PYTHONPATH.,
guix-commits <=
- 18/131: gnu: python-packaging-bootstrap: Remove dependency., guix-commits, 2021/02/01
- 22/131: gnu: solaar: Do not read PYTHONPATH from environment., guix-commits, 2021/02/01
- 24/131: gnu: python-pybedtools: Streamline following Python build system changes., guix-commits, 2021/02/01
- 33/131: gnu: ganeti: Do not set PYTHONPATH., guix-commits, 2021/02/01
- 37/131: gnu: tensorflow: Do not alter PYTHONPATH., guix-commits, 2021/02/01
- 39/131: gnu: python-rpy2: Do not set PYTHONPATH., guix-commits, 2021/02/01
- 49/131: gnu: python-hyperkitty: Do not set PYTHONPATH., guix-commits, 2021/02/01
- 53/131: gnu: meson-0.55: Update to 0.55.3., guix-commits, 2021/02/01
- 30/131: gnu: python-xmlschema: Do not set PYTHONPATH., guix-commits, 2021/02/01
- 29/131: gnu: python-loompy: Do not set PYTHONPATH., guix-commits, 2021/02/01