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branch master updated: gnu: vcflib: Fix generated pkg-config file.
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guix-commits |
Subject: |
branch master updated: gnu: vcflib: Fix generated pkg-config file. |
Date: |
Mon, 01 Feb 2021 12:03:44 -0500 |
This is an automated email from the git hooks/post-receive script.
efraim pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 877ab02 gnu: vcflib: Fix generated pkg-config file.
877ab02 is described below
commit 877ab0266c69858a9d4554dffba89dc5300a0736
Author: Efraim Flashner <efraim@flashner.co.il>
AuthorDate: Mon Feb 1 18:18:42 2021 +0200
gnu: vcflib: Fix generated pkg-config file.
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom
generated pkg-config file, link with all needed libraries and
fix linker library.
* gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
---
gnu/packages/bioinformatics.scm | 8 ++++----
gnu/packages/patches/freebayes-devendor-deps.patch | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5b14e76..39611d2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15209,18 +15209,18 @@ library automatically handles index file generation
and use.")
(let* ((out (assoc-ref outputs "out"))
(pkgconfig (string-append out "/lib/pkgconfig")))
(mkdir-p pkgconfig)
- (with-output-to-file (string-append pkgconfig "/libvcflib.pc")
+ (with-output-to-file (string-append pkgconfig "/vcflib.pc")
(lambda _
(format #t "prefix=~a~@
exec_prefix=${prefix}~@
libdir=${exec_prefix}/lib~@
includedir=${prefix}/include~@
~@
- Name: libvcflib~@
+ Name: vcflib~@
Version: ~a~@
- Requires: smithwaterman, fastahack~@
+ Requires: smithwaterman, fastahack, tabixpp~@
Description: C++ library for parsing and
manipulating VCF files~@
- Libs: -L${libdir} -llibvcflib~@
+ Libs: -L${libdir} -lvcflib~@
Cflags: -I${includedir}~%"
out ,version)))
#t))))))
diff --git a/gnu/packages/patches/freebayes-devendor-deps.patch
b/gnu/packages/patches/freebayes-devendor-deps.patch
index 7e84666..9886de1 100644
--- a/gnu/packages/patches/freebayes-devendor-deps.patch
+++ b/gnu/packages/patches/freebayes-devendor-deps.patch
@@ -23,7 +23,7 @@ index f6bf242..bded4af 100644
+tabixpp_dep = dependency('tabixpp', required : false)
+fastahack_dep = dependency('fastahack', required : false)
+smithwaterman_dep = dependency('smithwaterman', required : false)
-+vcflib_dep = dependency('libvcflib', required: false)
++vcflib_dep = dependency('vcflib', required: false)
thread_dep = dependency('threads')
if htslib_dep.found()
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