branch master updated: gnu: bowtie1: Update to 1.3.0.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 160e4a9  gnu: bowtie1: Update to 1.3.0.
160e4a9 is described below

commit 160e4a95e7ef0880939afca7d0af4c9b5596bc6b
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu Feb 11 22:03:29 2021 +0100

    gnu: bowtie1: Update to 1.3.0.
    
    * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
    [arguments]: Set CC in make flags.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioinformatics.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1a0e72a..6f835b3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.")
 (define-public bowtie1
   (package
     (name "bowtie1")
-    (version "1.2.3")
+    (version "1.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
-                                  version "/bowtie-src-x86_64.zip"))
+                                  version "/bowtie-" version "-src.zip"))
               (sha256
                (base32
-                "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4"))
+                "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
               (modules '((guix build utils)))
               (snippet
                '(substitute* "Makefile"
@@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.")
     (arguments
      '(#:tests? #f                      ; no "check" target
        #:make-flags
-       (list "all"
+       (list "CC=gcc" "all"
              (string-append "prefix=" (assoc-ref %outputs "out")))
        #:phases
        (modify-phases %standard-phases