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branch master updated: gnu: r-summarizedexperiment: Move to (gnu package


From: guix-commits
Subject: branch master updated: gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).
Date: Tue, 04 May 2021 04:12:17 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 7694ace  gnu: r-summarizedexperiment: Move to (gnu packages 
bioconductor).
7694ace is described below

commit 7694acebd18d9b32fd01b70819c1e79de05b4f52
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue May 4 10:11:34 2021 +0200

    gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable 
from here...
    * gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
---
 gnu/packages/bioconductor.scm   | 34 ++++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 34 ----------------------------------
 2 files changed, 34 insertions(+), 34 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 79aaf92..9b49c6e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2395,6 +2395,40 @@ purposes.  The package also contains legacy support for 
early single-end,
 ungapped alignment formats.")
     (license license:artistic2.0)))
 
+(define-public r-summarizedexperiment
+  (package
+    (name "r-summarizedexperiment")
+    (version "1.20.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "SummarizedExperiment" version))
+              (sha256
+               (base32
+                "04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps"))))
+    (properties
+     `((upstream-name . "SummarizedExperiment")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-delayedarray" ,r-delayedarray)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-matrix" ,r-matrix)
+       ("r-matrixgenerics" ,r-matrixgenerics)
+       ("r-s4vectors" ,r-s4vectors)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/SummarizedExperiment";)
+    (synopsis "Container for representing genomic ranges by sample")
+    (description
+     "The SummarizedExperiment container contains one or more assays, each
+represented by a matrix-like object of numeric or other mode.  The rows
+typically represent genomic ranges of interest and the columns represent
+samples.")
+    (license license:artistic2.0)))
+
 (define-public r-systempiper
   (package
     (name "r-systempiper")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index eda7416..de76e67 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7838,40 +7838,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf";)
     (license license:expat)))
 
-(define-public r-summarizedexperiment
-  (package
-    (name "r-summarizedexperiment")
-    (version "1.20.0")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "SummarizedExperiment" version))
-              (sha256
-               (base32
-                "04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps"))))
-    (properties
-     `((upstream-name . "SummarizedExperiment")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biobase" ,r-biobase)
-       ("r-biocgenerics" ,r-biocgenerics)
-       ("r-delayedarray" ,r-delayedarray)
-       ("r-genomeinfodb" ,r-genomeinfodb)
-       ("r-genomicranges" ,r-genomicranges)
-       ("r-iranges" ,r-iranges)
-       ("r-matrix" ,r-matrix)
-       ("r-matrixgenerics" ,r-matrixgenerics)
-       ("r-s4vectors" ,r-s4vectors)))
-    (native-inputs
-     `(("r-knitr" ,r-knitr)))
-    (home-page "https://bioconductor.org/packages/SummarizedExperiment";)
-    (synopsis "Container for representing genomic ranges by sample")
-    (description
-     "The SummarizedExperiment container contains one or more assays, each
-represented by a matrix-like object of numeric or other mode.  The rows
-typically represent genomic ranges of interest and the columns represent
-samples.")
-    (license license:artistic2.0)))
-
 (define-public r-genomicalignments
   (package
     (name "r-genomicalignments")



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