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branch master updated: gnu: Add r-vcfr.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-vcfr. |
Date: |
Thu, 27 May 2021 08:27:09 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new c8286c8 gnu: Add r-vcfr.
c8286c8 is described below
commit c8286c8d4a1a720362b3f87fa19b4d6770c38584
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Thu May 27 14:26:41 2021 +0200
gnu: Add r-vcfr.
* gnu/packages/cran.scm (r-vcfr): New variable.
---
gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 00ea096..94966e8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5286,6 +5286,44 @@ Friendly and is now the main support package for a new
book, \"Discrete Data
Analysis with R\" by Michael Friendly and David Meyer (2015).")
(license license:gpl2)))
+(define-public r-vcfr
+ (package
+ (name "r-vcfr")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "vcfR" version))
+ (sha256
+ (base32
+ "0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-dplyr" ,r-dplyr)
+ ("r-magrittr" ,r-magrittr)
+ ("r-memuse" ,r-memuse)
+ ("r-pinfsc50" ,r-pinfsc50)
+ ("r-rcpp" ,r-rcpp)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-vegan" ,r-vegan)
+ ("r-viridislite" ,r-viridislite)))
+ (home-page "https://github.com/knausb/vcfR")
+ (synopsis "Manipulate and visualize VCF data")
+ (description "This package facilitates easy manipulation of variant call
+format (VCF) data. Functions are provided to rapidly read from and write to
+VCF files. Once VCF data is read into R, a parser function extracts matrices
+of data. This information can then be used for quality control or other
+purposes. Additional functions provide visualization of genomic data. Once
+processing is complete data may be written to a VCF file. It also may be
+converted into other popular R objects. This package provides a link between
+VCF data and familiar R software.")
+ (license license:gpl3)))
+
(define-public r-ica
(package
(name "r-ica")
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