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branch master updated: gnu: Add python-pyega3.
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guix-commits |
Subject: |
branch master updated: gnu: Add python-pyega3. |
Date: |
Thu, 27 May 2021 17:02:04 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 87c9f63 gnu: Add python-pyega3.
87c9f63 is described below
commit 87c9f63fce05063c190e277a8d79803fa3693e11
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Thu May 27 23:01:35 2021 +0200
gnu: Add python-pyega3.
* gnu/packages/bioinformatics.scm (python-pyega3): New variable.
---
gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6f3bc96..f38c0c0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1994,6 +1994,45 @@ multiple sequence alignments.")
(define-public python2-bx-python
(package-with-python2 python-bx-python))
+(define-public python-pyega3
+ (package
+ (name "python-pyega3")
+ (version "3.4.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyega3" version))
+ (sha256
+ (base32
+ "1k736in8g27rarx65ym9xk50x53zjg75h37bb8ljynxv04rypx2q"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; The tests require network access.
+ (native-inputs
+ `(("python-psutil" ,python-psutil)
+ ("python-htsget" ,python-htsget)))
+ (propagated-inputs
+ `(("python-requests" ,python-requests)
+ ("python-tqdm" ,python-tqdm)
+ ("python-urllib3" ,python-urllib3)
+ ("python-responses" ,python-responses)))
+ (home-page "https://github.com/EGA-archive/ega-download-client")
+ (synopsis "Python client for EGA")
+ (description "This package is a python-based tool for viewing and
+downloading files from authorized EGA datasets. It uses the EGA data API and
+has several key features:
+@itemize
+@item Files are transferred over secure https connections and received
+ unencrypted, so no need for decryption after download.
+@item Downloads resume from where they left off in the event that the
+ connection is interrupted.
+@item Supports file segmenting and parallelized download of segments,
+ improving overall performance.
+@item After download completes, file integrity is verified using checksums.
+@item Implements the GA4GH-compliant htsget protocol for download of genomic
+ ranges for data files with accompanying index files.
+@end itemize\n")
+ (license license:asl2.0)))
+
(define-public python-pysam
(package
(name "python-pysam")
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