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17/54: gnu: r-deseq: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
17/54: gnu: r-deseq: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:08 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit ef954bb4884185466bc4833c365ecb01be3a0a20
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:25:49 2021 +0200
gnu: r-deseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 31 -------------------------------
2 files changed, 31 insertions(+), 31 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3f057a3..65dfce0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2218,6 +2218,37 @@ genome data packages and support for efficient SNP
representation.")
analysis.")
(license license:artistic2.0)))
+(define-public r-deseq
+ (package
+ (name "r-deseq")
+ (version "1.39.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DESeq" version))
+ (sha256
+ (base32
+ "047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
+ (properties `((upstream-name . "DESeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genefilter" ,r-genefilter)
+ ("r-geneplotter" ,r-geneplotter)
+ ("r-lattice" ,r-lattice)
+ ("r-locfit" ,r-locfit)
+ ("r-mass" ,r-mass)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)))
+ (home-page "https://www-huber.embl.de/users/anders/DESeq/")
+ (synopsis "Differential gene expression analysis")
+ (description
+ "This package provides tools for estimating variance-mean dependence in
+count data from high-throughput genetic sequencing assays and for testing for
+differential expression based on a model using the negative binomial
+distribution.")
+ (license license:gpl3+)))
+
(define-public r-deseq2
(package
(name "r-deseq2")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 687da80..d23c3cb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9196,37 +9196,6 @@ their variance is independent of the mean, and they are
usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-deseq
- (package
- (name "r-deseq")
- (version "1.39.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "DESeq" version))
- (sha256
- (base32
- "047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
- (properties `((upstream-name . "DESeq")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-genefilter" ,r-genefilter)
- ("r-geneplotter" ,r-geneplotter)
- ("r-lattice" ,r-lattice)
- ("r-locfit" ,r-locfit)
- ("r-mass" ,r-mass)
- ("r-rcolorbrewer" ,r-rcolorbrewer)))
- (home-page "https://www-huber.embl.de/users/anders/DESeq/")
- (synopsis "Differential gene expression analysis")
- (description
- "This package provides tools for estimating variance-mean dependence in
-count data from high-throughput genetic sequencing assays and for testing for
-differential expression based on a model using the negative binomial
-distribution.")
- (license license:gpl3+)))
-
(define-public r-edaseq
(package
(name "r-edaseq")
- 19/54: gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., (continued)
- 19/54: gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 06/54: gnu: r-msnid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 07/54: gnu: r-msnbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 05/54: gnu: r-bsgenome: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 03/54: gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 12/54: gnu: r-genomation: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 10/54: gnu: r-seqpattern: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 15/54: gnu: r-mzid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 17/54: gnu: r-deseq: Move to (gnu packages bioconductor).,
guix-commits <=
- 29/54: gnu: r-affyio: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 21/54: gnu: r-fastseg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 25/54: gnu: r-complexheatmap: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 20/54: gnu: r-annotationhub: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 22/54: gnu: r-affy: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 32/54: gnu: r-ensembldb: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 33/54: gnu: r-mzr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31