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31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fea33b9d1e35c18fb214c12653b7624a627271d9
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:03 2021 +0200
gnu: r-biovizbase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here...
* gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 42 -----------------------------------------
2 files changed, 42 insertions(+), 42 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a631143..56e7186 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2249,6 +2249,48 @@ matching algorithms, and other utilities, for fast
manipulation of large
biological sequences or sets of sequences.")
(license license:artistic2.0)))
+(define-public r-biovizbase
+ (package
+ (name "r-biovizbase")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biovizBase" version))
+ (sha256
+ (base32
+ "10jflvadfcgxq2jnfxkpn417xd8ibh3zllz9rsqnq5w3wgfr4fhq"))))
+ (properties `((upstream-name . "biovizBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationfilter" ,r-annotationfilter)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-dichromat" ,r-dichromat)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-hmisc" ,r-hmisc)
+ ("r-iranges" ,r-iranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rlang" ,r-rlang)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/biovizBase")
+ (synopsis "Basic graphic utilities for visualization of genomic data")
+ (description
+ "The biovizBase package is designed to provide a set of utilities, color
+schemes and conventions for genomic data. It serves as the base for various
+high-level packages for biological data visualization. This saves development
+effort and encourages consistency.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome
(package
(name "r-bsgenome")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d133764..b17ca0f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9153,48 +9153,6 @@ chromosome region or transcript models of lincRNA
genes.")
;; No version specified
(license license:lgpl3+)))
-(define-public r-biovizbase
- (package
- (name "r-biovizbase")
- (version "1.38.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "biovizBase" version))
- (sha256
- (base32
- "10jflvadfcgxq2jnfxkpn417xd8ibh3zllz9rsqnq5w3wgfr4fhq"))))
- (properties `((upstream-name . "biovizBase")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-annotationfilter" ,r-annotationfilter)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biostrings" ,r-biostrings)
- ("r-dichromat" ,r-dichromat)
- ("r-ensembldb" ,r-ensembldb)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicfeatures" ,r-genomicfeatures)
- ("r-genomicranges" ,r-genomicranges)
- ("r-hmisc" ,r-hmisc)
- ("r-iranges" ,r-iranges)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-rlang" ,r-rlang)
- ("r-rsamtools" ,r-rsamtools)
- ("r-s4vectors" ,r-s4vectors)
- ("r-scales" ,r-scales)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-variantannotation" ,r-variantannotation)))
- (home-page "https://bioconductor.org/packages/biovizBase")
- (synopsis "Basic graphic utilities for visualization of genomic data")
- (description
- "The biovizBase package is designed to provide a set of utilities, color
-schemes and conventions for genomic data. It serves as the base for various
-high-level packages for biological data visualization. This saves development
-effort and encourages consistency.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., (continued)
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 46/54: gnu: r-rhdf5: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 48/54: gnu: r-copyhelper: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 51/54: gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1., guix-commits, 2021/05/31
- 24/54: gnu: r-gage: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 26/54: gnu: r-genomicfiles: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 27/54: gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor).,
guix-commits <=
- 36/54: gnu: r-motifrg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 39/54: gnu: r-rhtslib: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 23/54: gnu: r-keggrest: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 30/54: gnu: r-vsn: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 35/54: gnu: r-sva: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 38/54: gnu: r-zlibbioc: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 41/54: gnu: r-rcas: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 44/54: gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 47/54: gnu: r-chipseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31