branch core-updates-frozen updated: gnu: vigra: Update to 1.11.1-0.9b514fa.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

lfam pushed a commit to branch core-updates-frozen
in repository guix.

The following commit(s) were added to refs/heads/core-updates-frozen by this 
push:
     new f4f4037  gnu: vigra: Update to 1.11.1-0.9b514fa.
f4f4037 is described below

commit f4f4037fcd237594f5c8211a0fd74a9af3bcd612
Author: Leo Famulari <leo@famulari.name>
AuthorDate: Sun Aug 8 15:53:12 2021 -0400

    gnu: vigra: Update to 1.11.1-0.9b514fa.
    
    * gnu/packages/image.scm (vigra): Update to 1.11.1-0.9b514fa.
    [source]: Use git-fetch. Remove obsolete patch.
    * gnu/packages/patches/vigra-python-compat.patch: Delete file.
    * gnu/local.mk (dist_patch_DATA): Remove it.
---
 gnu/local.mk                                   |   1 -
 gnu/packages/image.scm                         | 152 +++++++++++++------------
 gnu/packages/patches/vigra-python-compat.patch |  18 ---
 3 files changed, 79 insertions(+), 92 deletions(-)

diff --git a/gnu/local.mk b/gnu/local.mk
index 2b0b585..aec89e9 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1795,7 +1795,6 @@ dist_patch_DATA =                                         
\
   %D%/packages/patches/vboot-utils-fix-format-load-address.patch       \
   %D%/packages/patches/vboot-utils-fix-tests-show-contents.patch       \
   %D%/packages/patches/vboot-utils-skip-test-workbuf.patch     \
-  %D%/packages/patches/vigra-python-compat.patch               \
   %D%/packages/patches/vinagre-newer-freerdp.patch             \
   %D%/packages/patches/vinagre-newer-rdp-parameters.patch      \
   %D%/packages/patches/virglrenderer-CVE-2017-6386.patch       \
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 19bbb2d..72fda9e 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -1175,79 +1175,85 @@ graphics image formats like PNG, BMP, JPEG, TIFF and 
others.")
    (home-page "http://freeimage.sourceforge.net";)))
 
 (define-public vigra
-  (package
-   (name "vigra")
-   (version "1.11.1")
-   (source
-    (origin
-      (method url-fetch)
-      (uri (string-append "https://github.com/ukoethe/vigra/releases/download/";
-                          "Version-" (string-join (string-split version #\.) 
"-")
-                          "/vigra-" version "-src.tar.gz"))
-      (patches (search-patches "vigra-python-compat.patch"))
-      (sha256 (base32
-                "1bqs8vx5i1bzamvv563i24gx2xxdidqyxh9iaj46mbznhc84wmm5"))))
-   (build-system cmake-build-system)
-   (inputs
-    `(("boost" ,boost)
-      ("fftw" ,fftw)
-      ("fftwf" ,fftwf)
-      ("hdf5" ,hdf5)
-      ("ilmbase" ,ilmbase) ; propagated by openexr, but needed explicitly
-                           ; to create a configure-flag
-      ("libjpeg" ,libjpeg-turbo)
-      ("libpng" ,libpng)
-      ("libtiff" ,libtiff)
-      ("openexr" ,openexr)
-      ("python" ,python-wrapper)
-      ("python-numpy" ,python-numpy)
-      ("zlib" ,zlib)))
-   (native-inputs
-    `(("doxygen" ,doxygen)
-      ("python-nose" ,python-nose)
-      ("sphinx" ,python-sphinx)))
-   (arguments
-    `(#:test-target "check"
-      #:phases
-      (modify-phases %standard-phases
-        (add-after 'unpack 'disable-broken-tests
-          (lambda _
-            ;; See https://github.com/ukoethe/vigra/issues/432
-            (substitute* "test/fourier/CMakeLists.txt"
-              (("VIGRA_ADD_TEST.*") ""))
-            ;; This test fails with Numpy 1.15:
-            ;; <https://github.com/ukoethe/vigra/issues/436>.
-            (substitute* "vigranumpy/test/CMakeLists.txt"
-              (("test1\\.py") ""))
-            #t)))
-      #:configure-flags
-        (list "-Wno-dev" ; suppress developer mode with lots of warnings
-              (string-append "-DVIGRANUMPY_INSTALL_DIR="
-                             (assoc-ref %outputs "out")
-                             "/lib/python"
-                             ,(version-major+minor (package-version python))
-                             "/site-packages")
-              ;; OpenEXR is not enabled by default.
-              "-DWITH_OPENEXR=1"
-              ;; Fix rounding error on 32-bit machines
-              "-DCMAKE_C_FLAGS=-ffloat-store"
-              ;; The header files of ilmbase are not found when included
-              ;; by the header files of openexr, and an explicit flag
-              ;; needs to be set.
-              (string-append "-DCMAKE_CXX_FLAGS=-I"
-                             (assoc-ref %build-inputs "ilmbase")
-                             "/include/OpenEXR"
-                             " -ffloat-store"))))
-   (synopsis "Computer vision library")
-   (description
-    "VIGRA stands for Vision with Generic Algorithms.  It is an image
-processing and analysis library that puts its main emphasis on customizable
-algorithms and data structures.  It is particularly strong for
-multi-dimensional image processing.")
-   (license license:expat)
-   (home-page "https://ukoethe.github.io/vigra/";)
-   (properties '((max-silent-time . 7200))))) ;2 hours, to avoid timing out
-
+    (let ((commit "9b514fa00a136f5fd81bb57ee9f6293c333ffc1f")
+          (revision "0"))
+    (package
+     (name "vigra")
+     (version (git-version "1.11.1" revision commit))
+     (source
+      (origin
+        ;; The last release is 1.11.1, from 2017. It's becoming more and more
+        ;; difficult to build this old release, and the upstream developers
+        ;; suggest on their home page to build from the Git repo, saying "It is
+        ;; generally safe to use the 'master' branch of the development 
snapshot,
+        ;; as we avoid uploading untested or incompatible changes to this 
branch."
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/ukoethe/vigra";)
+               (commit commit)))
+        (file-name (git-file-name name version))
+        (sha256 (base32
+                  "1vzlypviala109imwxkp46lqhhxszf79ypfb8wxg6z7g02j7mm73"))))
+     (build-system cmake-build-system)
+     (inputs
+      `(("boost" ,boost)
+        ("fftw" ,fftw)
+        ("fftwf" ,fftwf)
+        ("hdf5" ,hdf5)
+        ("ilmbase" ,ilmbase) ; propagated by openexr, but needed explicitly
+                             ; to create a configure-flag
+        ("libjpeg" ,libjpeg-turbo)
+        ("libpng" ,libpng)
+        ("libtiff" ,libtiff)
+        ("openexr" ,openexr)
+        ("python" ,python-wrapper)
+        ("python-numpy" ,python-numpy)
+        ("zlib" ,zlib)))
+     (native-inputs
+      `(("doxygen" ,doxygen)
+        ("python-nose" ,python-nose)
+        ("sphinx" ,python-sphinx)))
+     (arguments
+      `(#:test-target "check"
+        #:phases
+        (modify-phases %standard-phases
+          (add-after 'unpack 'disable-broken-tests
+            (lambda _
+              ;; See https://github.com/ukoethe/vigra/issues/432
+              (substitute* "test/fourier/CMakeLists.txt"
+                (("VIGRA_ADD_TEST.*") ""))
+              ;; This test fails with Numpy 1.15:
+              ;; <https://github.com/ukoethe/vigra/issues/436>.
+              (substitute* "vigranumpy/test/CMakeLists.txt"
+                (("test1\\.py") ""))
+              #t)))
+        #:configure-flags
+          (list "-Wno-dev" ; suppress developer mode with lots of warnings
+                (string-append "-DVIGRANUMPY_INSTALL_DIR="
+                               (assoc-ref %outputs "out")
+                               "/lib/python"
+                               ,(version-major+minor (package-version python))
+                               "/site-packages")
+                ;; OpenEXR is not enabled by default.
+                "-DWITH_OPENEXR=1"
+                ;; Fix rounding error on 32-bit machines
+                "-DCMAKE_C_FLAGS=-ffloat-store"
+                ;; The header files of ilmbase are not found when included
+                ;; by the header files of openexr, and an explicit flag
+                ;; needs to be set.
+                (string-append "-DCMAKE_CXX_FLAGS=-I"
+                               (assoc-ref %build-inputs "ilmbase")
+                               "/include/OpenEXR"
+                               " -ffloat-store"))))
+     (synopsis "Computer vision library")
+     (description
+      "VIGRA stands for Vision with Generic Algorithms.  It is an image
+  processing and analysis library that puts its main emphasis on customizable
+  algorithms and data structures.  It is particularly strong for
+  multi-dimensional image processing.")
+     (license license:expat)
+     (home-page "https://ukoethe.github.io/vigra/";)
+     (properties '((max-silent-time . 7200)))))) ;2 hours, to avoid timing out
 
 (define-public vigra-c
   (let* ((commit "66ff4fa5a7d4a77415caa676a45c2c6ea16562e7")
diff --git a/gnu/packages/patches/vigra-python-compat.patch 
b/gnu/packages/patches/vigra-python-compat.patch
deleted file mode 100644
index 63c6abb..0000000
--- a/gnu/packages/patches/vigra-python-compat.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-Fix build with Boost + Python 3.7.
-
-Taken from upstream:
-https://github.com/ukoethe/vigra/commit/a6fa62663c6a6b752ed0707e95f643e25867a0f9
-
-diff --git a/vigranumpy/src/core/vigranumpycore.cxx 
b/vigranumpy/src/core/vigranumpycore.cxx
-index ec38d3636..c81c6ae52 100644
---- a/vigranumpy/src/core/vigranumpycore.cxx
-+++ b/vigranumpy/src/core/vigranumpycore.cxx
-@@ -61,7 +61,7 @@ UInt32 pychecksum(python::str const & s)
-       return checksum(data, size);
- #else
-       Py_ssize_t size = 0;
--      char * data = PyUnicode_AsUTF8AndSize(s.ptr(), &size);
-+      const char * data = PyUnicode_AsUTF8AndSize(s.ptr(), &size);
-       return checksum(data, size);
- #endif
- }