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branch master updated: gnu: Add r-catch.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-catch. |
Date: |
Wed, 01 Sep 2021 08:54:35 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new c75b30d gnu: Add r-catch.
c75b30d is described below
commit c75b30d58f0becb0a5cd6a8bfe69d1063b0d1ada
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Sep 1 14:52:12 2021 +0200
gnu: Add r-catch.
* gnu/packages/bioinformatics.scm (r-catch): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index aef9625..b74d892 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15058,6 +15058,34 @@ copy number estimation, as described by
@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
(license license:gpl3)))
+(define-public r-catch
+ (let ((commit "196ddd5a51b1a5f5daa01de53fdaad9b7505e084")
+ (revision "1"))
+ (package
+ (name "r-catch")
+ (version (git-version "1.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/zhanyinx/CaTCH")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "11c7f1fc8f57wnwk1hrgr5y814m80zj8gkz5021vxyxy2v02cqgd"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "CaTCH"))))))
+ (home-page "https://github.com/zhanyinx/CaTCH_R")
+ (synopsis "Call a hierarchy of domains based on Hi-C data")
+ (description "This package allows building the hierarchy of domains
+starting from Hi-C data. Each hierarchical level is identified by a minimum
+value of physical insulation between neighboring domains.")
+ (license license:gpl2+))))
+
(define-public r-spectre
(let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a")
(revision "1"))
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