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branch core-updates-frozen updated (923c252 -> f62e47d)
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From: |
guix-commits |
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Subject: |
branch core-updates-frozen updated (923c252 -> f62e47d) |
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Date: |
Thu, 16 Sep 2021 19:28:26 -0400 (EDT) |
mbakke pushed a change to branch core-updates-frozen
in repository guix.
from 923c252 gnu: gmtp: Fix build.
new 52f4259 gnu: texlive-pdftex: Adjust to changes from 'master'.
new c896287 gnu: texlive-context: Adjust to changes from 'master'.
add a185a02 gnu: linux-libre: Parameterize the revision of the deblob
scripts.
add 3cf518b gnu: linux-libre: Update to 5.13.14.
add cb3b77a gnu: linux-libre 5.10: Update to 5.10.62.
add ec51a33 gnu: linux-libre 5.4: Update to 5.4.144.
add adb520b gnu: linux-libre 4.19: Update to 4.19.206.
add 4f30ae4 gnu: linux-libre 4.14: Update to 4.14.246.
add def683d gnu: linux-libre 4.9: Update to 4.9.282.
add 36e186d gnu: linux-libre 4.4: Update to 4.4.283.
add 8b2b027 gnu: Add linux-libre 5.14.1.
add 9cf8786 gnu: emacs-lsp-mode: Update to 8.0.0.
add 8ffbf25 gnu: emacs-lsp-treemacs: Update to 0.4.
add 5e5516f gnu: emacs-lsp-ui: Update to 8.0.0.
add 8b81c68 gnu: emacs-lsp-ivy: Update to 0.5.
add 4610f44 gnu: emacs-lsp-mode: Add clients.
add d905c34 gnu: emacs-lsp-mode: Move all client libraries at top-level.
add 4867738 gnu: emacs-dap-mode: Update to 0.7.
add 62381dc gnu: Add r-beclear.
add ec99715 gnu: Add r-rslurm.
add af81591 gnu: Add r-bgeecall.
add e658cde gnu: Add r-chk.
add 26da032 gnu: Add r-org-bt-eg-db.
add a59aee1 gnu: Add r-bgeedb.
add 5143f38 gnu: Add r-biobtreer.
add e43c6d2 gnu: Add r-minet.
add b76b47e gnu: Add r-genetclassifier.
add c9d545a gnu: Add r-dir-expiry.
add dde984ca gnu: Add r-basilisk-utils.
add fd5372e gnu: Add r-basilisk.
add 7ca0a0f gnu: Add r-biocthis.
add 2c8e359 gnu: Add r-biocdockermanager.
add 48e300b gnu: Add r-biodb.
add aed1504 gnu: Add r-biomformat.
add 336e618 gnu: Add r-nsprcomp.
add 987d058 gnu: Add r-cmplot.
add afb697c gnu: Add r-precrec.
add 17f3ec4 gnu: Add r-netrep.
add 797d0bc gnu: Add r-intergraph.
add 96b966a gnu: Add r-ggnetwork.
add 9899f47 gnu: Add r-cvauc.
add 4506ef4 gnu: Add r-gam.
add 8439222 gnu: Add r-superlearner.
add b04a2ef gnu: Add r-drtmle.
add a472f50 gnu: Add r-dofuture.
add 7b986d2 gnu: Add r-superheat.
add 83f020c gnu: Add r-qualv.
add 97c1055 gnu: emacs-autocrypt: Update source and homepage.
add 7f6869c gnu: emacs-shell-command: Update source.
add 44db980 gnu: Add slurm-monitor.
add bcbd8b7 gnu: Add r-mus-musculus.
add 0780bcc gnu: Add r-biscuiteerdata.
add e10a3bc gnu: Add r-mvcclass.
add 9cb08ea gnu: Add r-biomvcclass.
add 2794024 gnu: Add r-biomvrcns.
add 4f6b382 gnu: Add r-bionero.
add 35526b6 gnu: Add r-bionet.
add d5f792a gnu: Add r-bionetstat.
add 32d8a7d gnu: Add r-bioqc.
add ccc1b9e gnu: Add r-biotip.
add b63fb6a gnu: Add r-biotmle.
add 0d1990b gnu: Add r-bsseq.
add f051f68 gnu: Add r-dmrseq.
add 5cfe5dd gnu: Add r-biscuiteer.
add 96db2ff gnu: racket-minimal: Remove top-level reference to
'chez-scheme'.
add 1cf866c import: Add hint for importer typo.
add b8b56ba system: Add hint for action typo.
add af4fa7c import: elpa: Support NonGNU ELPA.
add e8a67f0 import: go: Fix import when import path redirects.
add 7865973 emacs-org-roam: Add new phase after unpack.
add 3d42aa3 gnu: mandoc: Add $MANPATH to native-search-paths.
add f744bf3 gnu: Add rust-rustyline-derive-0.2.
add f68d32f gnu: Add rust-rustyline-5.
add 221d757 gnu: Add rust-pledge-0.3.
add a66fb6d gnu: Add rust-bufstream-0.1.
add 3af06a4 gnu: Add rust-elf-0.0.10.
add 3e085ba gnu: Add rust-boxxy-0.11.
add af7f286 gnu: Add rust-rusticata-macros-3.
add 6597c07 gnu: Add rust-pretty-assertions-0.7.
add 198b376 gnu: Add rust-nom-derive-0.7.
add 7350ac0 gnu: Add rust-cookie-factory-0.3.
add 2c8c3e2 gnu: Add rust-hex-literal-0.3.
add d1c5437 gnu: Add rust-tls-parser-0.10.
add b5f0bac gnu: Add rust-strum-macros-0.19.
add f604fe1 gnu: Add rust-strum-0.19.
add d7981a1 gnu: Add rust-seccomp-sys-0.1.
add 67de1fc gnu: Add rust-syscallz-0.15.
add ef13866 gnu: Add rust-reduce-0.1.
add 759530a gnu: Add rust-pktparse-0.5.
add 1e5ebd8 gnu: Add rust-pcap-sys-0.1.
add 73fa0b3 gnu: Add rust-enum-primitive-derive-0.2.
add 9efc34a gnu: Add rust-dhcp4r-0.2.
add a8555e0 gnu: Add sniffglue.
add 1ff1cd2 gnu: icecat: Update to 78.14.0-guix0-preview1 [fixes
CVE-2021-38493].
add 5c5e9d4 gnu: josm: Update to 18193.
add f8f94cc guix: dune-build-system: Put dune into a reproducible release
mode.
add 47d3585 gnu: emacs-org-reveal: Update to 20210902-1.fe9148b.
add 1dc3825 git: 'resolve-reference' handles 'git describe'-style commit
IDs.
add 16ef7b4 transformations: Git tags and 'git describe' style IDs are
used as version.
add de15397 doc: add clarifications to Linode cookbook recipe
add 902de26 gnu: autoconf: Unpatch shebangs on files that "autoconf -i"
installs.
add fb32a38 swh: Adjust <vault-reply> to latest API changes.
add 9fc4b72 gnu: Add vim-gemini-vim.
add ededaa0 gnu: Add vim-slime.
add 6858c15 gnu: qemu-minimal: Don't build static binaries.
add 4f46a45 gnu: linux-libre 5.14: Update to 5.14.2.
add 29c2570 gnu: linux-libre: Update to 5.13.15.
add 73121dd gnu: linux-libre 5.10: Update to 5.10.63.
add 14bcd68 gnu: python-pikepdf: Update to 3.0.0.
add 7767464 gnu: ghc-pandoc-types: Update home page.
add bae57cc gnu: python-decorator: Update to 5.0.9.
add 14d8413 gnu: go-1.16: Update to 1.16.8.
add d36c73b gnu: Add go-1.17.
add cf4ccde gnu: go-1.17: Update to 1.17.1.
add 370d1cd Revert "gnu: python-pikepdf: Update to 3.0.0."
add d8a184f gnu: mailutils: Add a listing of the commands it contains.
add 173b6f6 gnu: mailutils: Update to 3.13.
add 49c6145 gnu: go-github-com-keybase-go-ps: Fix tests when building
with Go 1.17.
add 4e1adbc gnu: go-github-com-sevlyar-go-daemon: Fix tests when building
with Go 1.17.
add f161f11 gnu: go-github-com-urfave-cli: Fix tests when building with
Go 1.17.
add 63cc4dd gnu: go-github-com-urfave-cli-v2: Fix tests when building
with Go 1.17.
add eb31966 gnu: mpfrcx: Update to 0.6.3.
add e11830d gnu: llvm-for-rocm: Move to llvm.scm.
add a87d8c9 base16: Reduce GC pressure in bytevector->base16-string.
add cb06f7c base32: Provide an open-coded 'bit-field'.
add 163d638 lint: archival: Warn about non-origin sources.
add ff613c2 swh: Adjust to new vault API.
add 60b42be swh: 'swh-download' reports revision lookup failures.
add fd22921 gnu: racket: fix `raco exe` with non-minimal Racket
add 87da416 gnu: racket: suppress build stamp
add 9875f9b import: elpa: Don't hardcode default branch to 'master'.
add 547256f gnu: blanket: Update to 0.4.1.
add c8cb76e gnu: castor: Update to 0.8.18.
add 5770f09 gnu: emacs-csv-mode: Update to 1.16.
add 3965ab8 gnu: emacs-debbugs: Update to 0.29.
add f2bfb14 gnu: emacs-consult-notmuch: Update to 0.5.
add 87bfea0 gnu: emacs-evil-matchit: Update to 2.4.0.
add 2496707 gnu: emacs-typescript-mode: Update to 0.4.
add 8000f9a gnu: emacs-yasnippet-snippets: Update to 1.0.
add e02984a gnu: nauty: Update to 2.7r3.
add 87ec1ae gnu: komikku: Update to 0.31.0.
add 73f68c1 gnu: python-wtforms: Update to 2.3.3 and adjust
arguments+inputs.
add ff64cba gnu: Add python-django-localflavor.
add acbb904 gnu: libxml++: Update to 3.2.0.
add 716448d gnu: Remove duplicate libxml++ packages.
add ca23fd6 linux-boot: Remove mummified comment.
add 3e9d717 gnu: pioneer: Update to 20210723.
add 93fba67 gnu: btrfs-progs: Update to 5.14.
add 9d9759f gnu: Add bird.
add b359ebe gnu: rust-winapi-i686-pc-windows-gnu@0.4: Remove bundled
libraries.
add 979b41a gnu: rust-winapi-x86-64-pc-windows-gnu@0.4: Remove bundled
libraries.
add b484373 gnu: rust-winreg-0.7: Skip build.
add 518bb41 gnu: shotcut: Update to 21.08.29.
add 53f54d4 Thank Christine under her updated name.
add 10c981b packages: Store 'location' field as a literal vector.
add 8531997 packages: Add 'package-definition-location'.
add 844a6ca gnu: Prefix licenses in docbook module.
add 9266291 gnu: Add docbook2x.
add 5f077d4 gnu: lxc: Generate man pages.
add e819753 gnu: i3lock: Update to 2.13.
add 49658fc gnu: i3lock-fancy: Add input.
add ec0e05f gnu: Add i3lock-blur.
add 5bde487 gnu: akonadi-search: Allow skipping tests.
add 8e7c84f gnu: kmail: Allow skipping tests.
add 7890ba0 gnu: kleopatra: Allow skipping tests.
add 43f9757 gnu: korganizer: Allow skipping tests.
add de4f5df build/go: Support cross compiling.
add 13c3fcb gnu: cuirass: Update to 1.1.0-4.6019040.
add f4cd871 gnu: linux-libre 5.14: Update to 5.14.3.
add 1e83ee9 gnu: linux-libre: Update to 5.13.16.
add 034ede2 gnu: linux-libre 5.10: Update to 5.10.64.
add cbfa72b gnu: linux-libre 5.4: Update to 5.4.145.
add 7229799 gnu: sudo: Update to 1.9.8.
add 3b1382e gnu: emacs-emms: Update to 7.7.
add d541193 gnu: Add emacs-pinyinlib.
add 4dee15e gnu: emacs-irony-mode: Update to 1.5.0.
add 157547f gnu: Add fheroes2
add aadf4d3 gnu: Add emacs-caml.
add 9afa15f6 gnu: emacs-telega-server: Update to 0.7.030.
add 1ada5e2 gnu: emacs-telega-server: use make-flags instead of modifying
makefile.
add 30a3100 gnu: emacs-telega: Install etc directory to better path.
add 5ab7f7f gnu: pitivi: Update to 2021.05.0.
add 88429c2 gnu: cozy: Update to 1.1.2.
add 3055d64 gnu: Add libeb.
add 17d26c4 gnu: Add qolibri.
add e47e9d9 gnu: Add texlive-psnfss.
add 9003bd8 gnu: Add texlive-pdftex.
add e668a9b gnu: texlive-charter: Propagate texlive-psnfss.
add f98dfdc gnu: Add texlive-context.
add 0f2e914 gnu: chez-web: Add texlive-charter.
add 7c21803 gnu: chez-web: Replace texlive-fonts-cm with texlive-cm.
add 0406f1c gnu: discrover: Update package name in texlive-union.
add 33d2574 gnu: giac: Update to 1.7.0-31.
add 4b48d1c gnu: emacs-string-inflection: Update to 1.0.15.
add 0bce863 gnu: Add python-crontab.
add fe98dfe gnu: notmuch: Build Texinfo manual.
add dceb7b0 gnu: notmuch: Make cross-compilable.
add d77da6d gnu: Add emacs-notmuch.
add f440ccd gnu: python-asyncssh: Update to 2.7.1.
add 3858275 guix: Replace 'define-public'.
add 67da646 download: Remove obsolete workaround.
add 3cb5ae8 download: Disarchive mirrors can be URL-returning procedures.
add 3b758dd etc: Add 'source-manifest.scm'.
add 98712c1 etc: Add 'disarchive-manifest.scm'.
add 08c7e7d scripts: import: Increase column width for pretty-printer.
add f16e6b5 gnu: Add usbip-utils
add ed91e7a gnu: usbip-utils: Do not build static libraries.
add 1289d41 gnu: Add python-w3lib
add 0b7a79f gnu: Add go-cloud-google-com-go-compute-metadata.
add 912880c gnu: Add go-github-com-google-gmail-oauth2-tools-go-sendgmail.
add 580984f system: Add trailing newline to /etc/timezone.
add 8bebfa9 gnu: gnome-commander: Update to 1.12.2.
add e831da8 gnu: pre-commit: Update to 2.15.0.
add e4f8bfb gnu: drawing: Update to 0.8.3.
add a0d38c0 gnu: teeworlds: Replace bundled font.
add c38cca1 gnu: teeworlds: Enable tests.
add a725194 gnu: gsequencer: Update to 3.10.18.
add c8e2358 build-system: linux-module: Support source-directory.
add cb0e6ec gnu: Add xpadneo.
add 28e9284 gnu: meld: Copy GTKSourceView styles.
add 8313587 gnu: Add av-98
add 87a9dc5 gnu: dav1d: Update to 0.9.2.
add 69f7a8f gnu: Add ghc-8.10.
add 39b43d0 gnu: ghc-8.8: Rename to ghc-next.
add a840cac import: cabal: Treat identifier names correctly.
add f72f4b4 store: 'map/accumulate-builds' processes the whole list in
case of cutoff.
add 39cee0f gnu: thunar: Update to 4.17.1.
add 68f51bf gnu: perl-const-fast: Fix typo in description.
add 00e3a3a gnu: xpadneo: Copy udev rules to /lib.
add 95992bd gnu: linux-libre 5.14: Update to 5.14.4.
add 105f023 gnu: linux-libre: Update to 5.13.17.
add 0864c86 gnu: linux-libre 5.10: Update to 5.10.65.
add 763a343 gnu: linux-libre 5.4: Update to 5.4.146.
add 1e684af gnu: Add wlsunset.
add 1e23004 gnu: python-natsort: Update to 7.1.1.
add 9be916a gnu: python-alembic: Update to 1.7.1.
add 3b13dae gnu: python-aws-sam-translator: Update to 1.38.0.
add ca9f5de gnu: python-cfn-lint: Update to 0.54.1.
add d0e2378 gnu: python-flask-sqlalchemy: Update to 2.5.1.
add 16110ba gnu: python-wtforms: Adjust for SQLAlchemy >= 1.4.
add 16236cd gnu: python-wtforms: Don't run style and coverage tests.
add d570b32 gnu: python-sadisplay: Update to 0.4.9.
add 0711ad0 gnu: python-sqlalchemy: Update to 1.4.23.
add 33bc3fb gnu: python-agate-sql: Update to 0.5.7.
add b7ef1e4 gnu: python-sql: Update to 1.3.0.
add 3bd222e gnu: python-relatorio: Update to 0.10.0.
add 85c90c2 gnu: trytond: Propagate inputs.
add 1422cae gnu: tryton: Propagate inputs.
add da0a8a1 gnu: tryton modules: Remove "python"- prefix from name.
add 321921e gnu: tryton modules: Unify native-inputs.
add e0605dd gnu: tryton modules: Remove propagated-inputs propagated
elsewhere.
add d4d3707 gnu: tryton applications and framework: Update to 6.0.x.
add 20d3c90 gnu: Add cryfs.
add 4fc3fb9 gnu: thunar: Revert to 4.16.8 (from 4.17.x development
series).
add 182c672 gnu: minetest-data: Fix indentation.
add 6773f21 gnu: minetest-mesecons: Fix indentation.
add b16f9f9 gnu: Add minetest-advtrains.
add 9f4bb5f gnu: Add minetest-basic-trains.
add ce0d39a gnu: Remove python2-natsort.
add 11845c3 gnu: Remove python2-alembic.
add 7de73ca gnu: Remove python2-wtforms.
add bb6481a gnu: varnish: Update to 7.0.0.
add 2a054d2 gnu: varnish-modules: Update to 0.19.0.
new 5c3cb22 Merge branch 'master' into core-updates-frozen
new f62e47d tests: Add missing module import.
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 6 +
THANKS | 2 +-
doc/guix-cookbook.texi | 37 +-
doc/guix.texi | 28 +-
etc/disarchive-manifest.scm | 112 +++
etc/source-manifest.scm | 66 ++
gnu/build/linux-boot.scm | 4 -
gnu/local.mk | 4 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/algebra.scm | 8 +-
gnu/packages/autotools.scm | 13 +-
.../linux-libre/{5.13-arm.conf => 5.14-arm.conf} | 102 ++-
.../{5.13-arm64.conf => 5.14-arm64.conf} | 135 ++-
.../linux-libre/{5.13-i686.conf => 5.14-i686.conf} | 160 ++--
.../{5.13-x86_64.conf => 5.14-x86_64.conf} | 168 ++--
gnu/packages/bioconductor.scm | 920 +++++++++++++++++++++
gnu/packages/ci.scm | 6 +-
gnu/packages/cran.scm | 413 +++++++++
gnu/packages/crates-io.scm | 585 ++++++++++++-
gnu/packages/crypto.scm | 77 ++
gnu/packages/databases.scm | 35 +-
gnu/packages/django.scm | 37 +
gnu/packages/docbook.scm | 110 ++-
gnu/packages/ebook.scm | 14 +-
gnu/packages/education.scm | 60 ++
gnu/packages/emacs-xyz.scm | 182 ++--
gnu/packages/engineering.scm | 2 +-
gnu/packages/games.scm | 49 +-
gnu/packages/geo.scm | 4 +-
gnu/packages/gnome.scm | 97 ++-
gnu/packages/gnuzilla.scm | 6 +-
gnu/packages/golang.scm | 266 +++++-
gnu/packages/haskell-xyz.scm | 3 +-
gnu/packages/haskell.scm | 62 +-
gnu/packages/kde-pim.scm | 21 +-
gnu/packages/linux.scm | 248 ++++--
gnu/packages/llvm.scm | 38 +
gnu/packages/mail.scm | 113 ++-
gnu/packages/man.scm | 4 +
gnu/packages/maths.scm | 4 +-
gnu/packages/minetest.scm | 125 ++-
gnu/packages/music.scm | 6 +-
gnu/packages/networking.scm | 60 +-
.../go-github-com-urfave-cli-fix-tests.patch | 28 +
.../go-github-com-urfave-cli-v2-fix-tests.patch | 37 +
.../mailutils-fix-uninitialized-variable.patch | 26 -
.../patches/racket-minimal-backport-1629887.patch | 28 +
gnu/packages/patchutils.scm | 7 +
gnu/packages/perl.scm | 2 +-
gnu/packages/python-web.scm | 73 +-
gnu/packages/python-xyz.scm | 57 +-
gnu/packages/racket.scm | 24 +-
gnu/packages/rocm.scm | 37 +-
gnu/packages/rust-apps.scm | 56 ++
gnu/packages/ssh.scm | 4 +-
gnu/packages/task-management.scm | 4 +-
gnu/packages/tex.scm | 127 +--
gnu/packages/tryton.scm | 564 +++++--------
gnu/packages/version-control.scm | 4 +-
gnu/packages/video.scm | 15 +-
gnu/packages/vim.scm | 60 ++
gnu/packages/virtualization.scm | 13 +-
gnu/packages/web-browsers.scm | 29 +
gnu/packages/web.scm | 55 +-
gnu/packages/wireservice.scm | 4 +-
gnu/packages/wm.scm | 43 +-
gnu/packages/xdisorg.scm | 28 +
gnu/packages/xfce.scm | 4 +-
gnu/packages/xml.scm | 75 --
gnu/system.scm | 7 +-
guix.scm | 5 +-
guix/base16.scm | 44 +-
guix/base32.scm | 15 +-
guix/build-system/dune.scm | 19 +-
guix/build-system/go.scm | 163 +++-
guix/build-system/linux-module.scm | 2 +
guix/build/download.scm | 23 +-
guix/build/dune-build-system.scm | 15 +-
guix/build/go-build-system.scm | 20 +-
guix/build/linux-module-build-system.scm | 9 +-
guix/download.scm | 10 +-
guix/git.scm | 33 +-
guix/import/cabal.scm | 13 +-
guix/import/elpa.scm | 4 +-
guix/import/go.scm | 9 +-
guix/lint.scm | 6 +-
guix/packages.scm | 85 +-
guix/scripts/import.scm | 12 +-
guix/scripts/system.scm | 31 +-
guix/store.scm | 41 +-
guix/swh.scm | 87 +-
guix/transformations.scm | 30 +-
tests/builders.scm | 1 +
tests/hackage.scm | 2 -
tests/packages.scm | 11 +
tests/store.scm | 36 +
tests/transformations.scm | 21 +
97 files changed, 5236 insertions(+), 1318 deletions(-)
create mode 100644 etc/disarchive-manifest.scm
create mode 100644 etc/source-manifest.scm
copy gnu/packages/aux-files/linux-libre/{5.13-arm.conf => 5.14-arm.conf} (99%)
copy gnu/packages/aux-files/linux-libre/{5.13-arm64.conf => 5.14-arm64.conf}
(99%)
copy gnu/packages/aux-files/linux-libre/{5.13-i686.conf => 5.14-i686.conf}
(99%)
copy gnu/packages/aux-files/linux-libre/{5.13-x86_64.conf => 5.14-x86_64.conf}
(98%)
create mode 100644
gnu/packages/patches/go-github-com-urfave-cli-fix-tests.patch
create mode 100644
gnu/packages/patches/go-github-com-urfave-cli-v2-fix-tests.patch
delete mode 100644
gnu/packages/patches/mailutils-fix-uninitialized-variable.patch
create mode 100644 gnu/packages/patches/racket-minimal-backport-1629887.patch
- branch core-updates-frozen updated (923c252 -> f62e47d),
guix-commits <=