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07/19: gnu: cd-hit: Replace reference to %outputs.
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guix-commits |
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Subject: |
07/19: gnu: cd-hit: Replace reference to %outputs. |
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Date: |
Fri, 3 Dec 2021 18:33:46 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit fd607a9efa3fcdbac3a55f081cc94c8cd9db901b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Dec 3 23:56:11 2021 +0100
gnu: cd-hit: Replace reference to %outputs.
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Replace reference to
%outputs with gexp.
---
gnu/packages/bioinformatics.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2a72fed..62b92c8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2570,9 +2570,9 @@ are not included due to their size.")
`(#:tests? #f ; there are no tests
#:make-flags
;; Executables are copied directly to the PREFIX.
- (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin")
- ;; Support longer sequences (e.g. Pacbio sequences)
- "MAX_SEQ=60000000")
+ ,#~(list (string-append "PREFIX=" #$output "/bin")
+ ;; Support longer sequences (e.g. Pacbio sequences)
+ "MAX_SEQ=60000000")
#:phases
(modify-phases %standard-phases
;; No "configure" script
- branch core-updates-frozen updated (6d4f260 -> 114eb98), guix-commits, 2021/12/03
- 01/19: gnu: qtltools: Replace references to %build-inputs., guix-commits, 2021/12/03
- 02/19: gnu: bedtools: Remove reference to %outputs., guix-commits, 2021/12/03
- 03/19: gnu: bless: Remove trailing #T from snippet and build phases., guix-commits, 2021/12/03
- 04/19: gnu: bless: Remove reference to %build-inputs., guix-commits, 2021/12/03
- 05/19: gnu: bowtie: Remove reference to %outputs., guix-commits, 2021/12/03
- 06/19: gnu: bowtie1: Replace reference to %outputs., guix-commits, 2021/12/03
- 07/19: gnu: cd-hit: Replace reference to %outputs.,
guix-commits <=
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs., guix-commits, 2021/12/03
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs., guix-commits, 2021/12/03
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03
- 16/19: gnu: mafft: Remove trailing #T., guix-commits, 2021/12/03
- 17/19: gnu: mash: Simplify snippet., guix-commits, 2021/12/03
- 09/19: gnu: delly: Replace reference to %outputs., guix-commits, 2021/12/03