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02/09: gnu: bwa-pssm: Fix build.
From: |
guix-commits |
Subject: |
02/09: gnu: bwa-pssm: Fix build. |
Date: |
Tue, 7 Dec 2021 17:52:13 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit b764d10e9185cb6a250c94c487e8c5f35078c13b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Dec 7 17:53:14 2021 +0100
gnu: bwa-pssm: Fix build.
* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
'patch-C-error.
---
gnu/packages/bioinformatics.scm | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8ca3d12..50f1a18 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2243,6 +2243,14 @@ and more accurate. BWA-MEM also has better performance
than BWA-backtrack for
(base32
"076c4q0cdqz8jgylb067y9zmvxglppnzi3qiscn0xiypgc6lgb5r"))))
(build-system gnu-build-system)
+ (arguments
+ (substitute-keyword-arguments (package-arguments bwa)
+ ((#:phases phases '%standard-phases)
+ `(modify-phases ,phases
+ (add-after 'unpack 'patch-C-error
+ (lambda _
+ (substitute* "pssm.c"
+ (("inline int map") "int map"))))))))
(inputs
`(("gdsl" ,gdsl)
("zlib" ,zlib)
- branch core-updates-frozen updated (8dcf062 -> 5fb1ba8), guix-commits, 2021/12/07
- 01/09: gnu: Add pbcopper., guix-commits, 2021/12/07
- 03/09: gnu: pbbam: Update to 1.7.0., guix-commits, 2021/12/07
- 08/09: gnu: blasr: Update to 5.3.5., guix-commits, 2021/12/07
- 02/09: gnu: bwa-pssm: Fix build.,
guix-commits <=
- 04/09: gnu: clipper: Update to 2.0.1., guix-commits, 2021/12/07
- 05/09: gnu: htseq: Update to 0.12.3., guix-commits, 2021/12/07
- 06/09: gnu: blasr-libcpp: Update to 5.3.5., guix-commits, 2021/12/07
- 07/09: gnu: blasr: Remove trailing #T., guix-commits, 2021/12/07
- 09/09: gnu: newick-utils: Pass -fcommon to compiler., guix-commits, 2021/12/07