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07/14: gnu: mantis: Update to 0.1-2.b6979a2.
From: |
guix-commits |
Subject: |
07/14: gnu: mantis: Update to 0.1-2.b6979a2. |
Date: |
Wed, 8 Dec 2021 08:33:41 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 1f7c06965c6b7707bb3d7ca0c2da606c11e53ee0
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Dec 8 12:46:33 2021 +0100
gnu: mantis: Update to 0.1-2.b6979a2.
* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2.
[arguments]: Disable the use of SSE4.2 instructions.
[native-inputs]: Build with GCC 7.
---
gnu/packages/bioinformatics.scm | 15 ++++++++++-----
1 file changed, 10 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 41b3cd9..90f26be 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11337,11 +11337,12 @@ enrichment.")
(license license:expat)))
(define-public mantis
- (let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
- (revision "1"))
+ ;; This is an arbitrary commit as a year has passed since 0.1 was tagged.
+ (let ((commit "b6979a269172a45201c8366680d8b889f889432b")
+ (revision "2"))
(package
(name "mantis")
- (version (git-version "0" revision commit))
+ (version (git-version "0.1" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -11350,13 +11351,17 @@ enrichment.")
(file-name (git-file-name name version))
(sha256
(base32
- "0iqbr0dhmlc8mzpirmm2s4pkzkwdgrcx50yx6cv3wlr2qi064p55"))))
+ "0dq8a785hnaxx5kq757m5czs8xpcjpcph1inq2nm8h6zfvqyj8xs"))))
(build-system cmake-build-system)
- (arguments '(#:tests? #f)) ; there are none
+ (arguments
+ '(#:tests? #f ; there are none
+ #:configure-flags (list "-DNH=ON"))) ; do not use SSE4.2 instructions
(inputs
`(("sdsl-lite" ,sdsl-lite)
("openssl" ,openssl)
("zlib" ,zlib)))
+ (native-inputs
+ `(("gcc" ,gcc-7)))
(home-page "https://github.com/splatlab/mantis")
(synopsis "Large-scale sequence-search index data structure")
(description "Mantis is a space-efficient data structure that can be
- branch core-updates-frozen updated (ee03b51 -> c806005), guix-commits, 2021/12/08
- 04/14: gnu: snap-aligner: Remove trailing #T., guix-commits, 2021/12/08
- 02/14: gnu: khmer: Cythonize source files., guix-commits, 2021/12/08
- 05/14: gnu: snap-aligner: Update to 2.0.0., guix-commits, 2021/12/08
- 06/14: gnu: imp: Disable tests., guix-commits, 2021/12/08
- 01/14: gnu: cwltool: Update to 3.1.20211107152837., guix-commits, 2021/12/08
- 08/14: gnu: tbsp: Update to 1.0.0-2.dc30c03., guix-commits, 2021/12/08
- 03/14: gnu: snap-aligner: Run tests conditionally., guix-commits, 2021/12/08
- 07/14: gnu: mantis: Update to 0.1-2.b6979a2.,
guix-commits <=
- 09/14: gnu: discrover: Remove trailing #T., guix-commits, 2021/12/08
- 10/14: gnu: discrover: Add texlive-fonts-ec to inputs., guix-commits, 2021/12/08
- 14/14: gnu: ocaml-mcl: Add -fcommon to compiler flags., guix-commits, 2021/12/08
- 12/14: gnu: paml: Remove trailing #T., guix-commits, 2021/12/08
- 11/14: gnu: sambamba: Remove trailing #T., guix-commits, 2021/12/08
- 13/14: gnu: paml: Pass -fcommon to compiler., guix-commits, 2021/12/08