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branch master updated: gnu: Add r-dearseq.


From: guix-commits
Subject: branch master updated: gnu: Add r-dearseq.
Date: Mon, 13 Dec 2021 04:05:47 -0500

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 531a69e  gnu: Add r-dearseq.
531a69e is described below

commit 531a69ecb6ac85d03230d242b739c9671c984d0a
Author: Marcel Schilling <marcel.schilling@uni-luebeck.de>
AuthorDate: Mon Dec 13 09:49:23 2021 +0100

    gnu: Add r-dearseq.
    
    * gnu/packages/bioconductor.scm (r-dearseq): New variable.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a25f56a..ee3ce80 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1518,6 +1518,36 @@ data.  In addition, provides numerous plotting functions 
for commonly
 used visualizations.")
    (license license:artistic2.0)))
 
+(define-public r-dearseq
+  (package
+    (name "r-dearseq")
+    (version "1.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "dearseq" version))
+       (sha256
+        (base32
+         "07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-kernsmooth" ,r-kernsmooth)
+       ("r-matrixstats" ,r-matrixstats)
+       ("r-patchwork" ,r-patchwork)
+       ("r-pbapply" ,r-pbapply)
+       ("r-statmod" ,r-statmod)
+       ("r-survey" ,r-survey)
+       ("r-viridislite" ,r-kernsmooth)))
+    (home-page "https://github.com/borishejblum/dearseq";)
+    (synopsis "DEA for RNA-seq data through a robust variance component test")
+    (description
+     "This is a package for Differential Expression Analysis of RNA-seq data.
+It features a variance component score test accounting for data
+heteroscedasticity through precision weights.  Perform both gene-wise and gene
+set analyses, and can deal with repeated or longitudinal data.")
+    (license license:gpl2)))
+
 (define-public r-decipher
   (package
     (name "r-decipher")



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