branch master updated (6a54715988 -> 36d2a03edc)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 6a54715988 gnu: musescore: Use new package style.
     new a6bf1c108e tests: Add tests for changed-inputs on old-style inputs.
     new 6226df77ee tests: Add failing tests for changed-inputs on new style 
inputs.
     new e86afe58ff guix/upstream: Let changed-inputs support the new input 
lists.
     new 2d666bd6c0 gnu: r-openssl: Update to 1.4.6.
     new d4e0534c4f gnu: r-openssl: Use openssl instead of libressl.
     new 734e1b185f gnu: r-valr: Update to 0.6.4.
     new b615af830b gnu: r-activedriverwgs: Update to 1.1.2.
     new 231e33d636 gnu: r-activedriverwgs: Update to 1.0.3.
     new 9a89cee1b1 gnu: Add r-matrixextra.
     new 3cb1548f91 gnu: Add r-densestbayes.
     new 38e4477a8b gnu: r-httpuv: Update to 1.6.4.
     new 9af1a9dd4a gnu: r-brio: Update to 1.1.3.
     new 0e6fee9bc0 gnu: r-datawizard: Update to 0.2.2.
     new 0d1e96cec3 gnu: r-rticles: Update to 0.22.
     new 8e538e080c gnu: r-v8: Update to 4.0.0.
     new 52a839ac52 gnu: r-ggpp: Update to 0.4.3.
     new 138ce13e44 gnu: r-ggpmisc: Update to 0.4.5.
     new 2f3eac29af gnu: r-shadowtext: Update to 0.1.0.
     new 8bfc37f725 gnu: r-ape: Update to 5.6.
     new 64b9ce4b92 gnu: r-glue: Update to 1.6.0.
     new d6a544a0e6 gnu: r-pkgbuild: Update to 1.3.1.
     new a01709b10e gnu: r-pkgload: Update to 1.2.4.
     new 23d84dd96c gnu: r-suppdists: Update to 1.1-9.7.
     new 5ff9cbf368 gnu: r-progressr: Update to 0.10.0.
     new 60f0c3b46e gnu: r-dimred: Update to 0.2.4.
     new 5248478c10 gnu: r-rmysql: Update to 0.10.23.
     new 2a1582d231 gnu: r-broom: Update to 0.7.11.
     new eafc0d0ecc gnu: r-mice: Update to 3.14.0.
     new 64953f106d gnu: r-hardyweinberg: Update to 1.7.4.
     new 53004bd0ee gnu: r-venndiagram: Update to 1.7.1.
     new 566ad34e97 gnu: r-xfun: Update to 0.29.
     new 2caa553d19 gnu: r-tinytex: Update to 0.36.
     new 42f26beb24 gnu: r-ttr: Update to 0.24.3.
     new 61949e5d3a gnu: r-arules: Update to 1.7-2.
     new 8f9ab3cfdc gnu: r-openxlsx: Update to 4.2.5.
     new 22e6c2a017 gnu: r-dtplyr: Update to 1.2.0.
     new 7a5fdca2a0 gnu: r-renv: Update to 0.15.0.
     new 2fdf20c0f0 gnu: r-rbibutils: Update to 2.2.7.
     new 10dd00af24 gnu: r-rdpack: Update to 2.1.3.
     new 5bdb2f59b8 gnu: r-sjmisc: Update to 2.8.9.
     new 85b2f49cc0 gnu: r-argparse: Update to 2.1.3.
     new de3a354107 gnu: r-raster: Update to 3.5-11.
     new 5319f8a582 gnu: r-abundant: Update to 1.2.
     new e125f8cd95 gnu: r-multcomp: Update to 1.4-18.
     new 4947de6cc1 gnu: r-emmeans: Update to 1.7.2.
     new 299c6bee4b gnu: r-sjplot: Update to 2.8.10.
     new c7f7565a26 gnu: r-fs: Update to 1.5.2.
     new 98dae5afe8 gnu: r-credentials: Update to 1.3.2.
     new b83f1507d8 gnu: r-gert: Update to 1.5.0.
     new dc66d59fd4 gnu: r-usethis: Update to 2.1.5.
     new dceb298991 gnu: r-sessioninfo: Update to 1.2.2.
     new 1b77ed8968 gnu: r-remotes: Update to 2.4.2.
     new 3693c56b89 gnu: r-ncdf4: Update to 1.19.
     new ffced01644 gnu: r-ks: Update to 1.13.3.
     new ea42d7fd71 gnu: r-fmsb: Update to 0.7.2.
     new 583965a89a gnu: r-parallelly: Update to 1.30.0.
     new df700d0a7c gnu: r-shinyjs: Update to 2.1.0.
     new 2774af54b7 gnu: r-repr: Update to 1.1.4.
     new ef3d590b6f gnu: r-irdisplay: Update to 1.1.
     new ba7c9cebaa gnu: r-irkernel: Update to 1.3.
     new 7fd640260c gnu: r-sets: Update to 1.0-20.
     new fc9f3a1fe3 gnu: r-wk: Update to 0.6.0.
     new 7a6af65660 gnu: r-sf: Update to 1.0-5.
     new 1f914b1476 gnu: r-spdep: Update to 1.1-13.
     new 3ec07eab56 gnu: r-pegas: Update to 1.1.
     new e70c6fcfdf gnu: r-rjava: Update to 1.0-6.
     new 84b8ded6a9 gnu: r-rex: Update to 1.2.1.
     new d7cfb89536 gnu: r-rsparse: Update to 0.5.0.
     new 19257cd24e gnu: r-ggfortify: Update to 0.4.14.
     new 8641947eaa gnu: r-uwot: Update to 0.1.11.
     new b16f0e55a8 gnu: r-graphlayouts: Update to 0.8.0.
     new ef74872125 gnu: r-terra: Update to 1.4-22.
     new d523463654 gnu: r-rgdal: Update to 1.5-28.
     new ba180e885c gnu: r-pracma: Update to 2.3.6.
     new d094209286 gnu: r-qgam: Update to 1.3.4.
     new 267a284a7a gnu: r-abtest: Update to 1.0.1.
     new 64680d3146 gnu: r-reldist: Update to 1.7-0.
     new 75d3010c22 gnu: r-anthropometry: Update to 1.17.
     new 1c12d1f239 gnu: r-proxyc: Update to 0.2.4.
     new 9aebde6d38 gnu: r-quanteda: Update to 3.2.0.
     new 4b955f9454 gnu: r-polycor: Update to 0.8-0.
     new 62a43dad1b gnu: r-rstan: Update to 2.21.3.
     new bcf7f926eb gnu: r-keyring: Update to 1.3.0.
     new 64d9529e7c gnu: r-brms: Update to 2.16.3.
     new 46c5659a36 gnu: r-fastshap: Update to 0.0.7.
     new 421318e1de gnu: r-spatstat-utils: Update to 2.3-0.
     new deb80f1548 gnu: r-spatstat-sparse: Update to 2.1-0.
     new 200e51adfd gnu: r-spatstat-data: Update to 2.1-2.
     new d7b9424710 gnu: r-spatstat-geom: Update to 2.3-1.
     new fa564e5799 gnu: r-spatstat-core: Update to 2.3-2.
     new 81c7c3548c gnu: r-spatstat-linnet: Update to 2.3-1.
     new ee8645a09e gnu: r-spatstat: Update to 2.3-0.
     new 9c52d5661a gnu: r-cpp11: Update to 0.4.2.
     new 8bd5d056f4 gnu: r-rfast: Update to 2.0.4.
     new e25fba029b gnu: r-igraph: Update to 1.2.10.
     new 9b13f04206 gnu: r-yardstick: Update to 0.0.9.
     new 2d2b6d7ea5 gnu: r-conflicted: Update to 1.1.0.
     new 82dbfd699e gnu: r-maldiquant: Update to 1.21.
     new 2815f89717 gnu: r-seuratobject: Update to 4.0.4.
     new 8814b5ae8d gnu: r-seurat: Update to 4.0.6.
     new d16effe7f9 gnu: r-phangorn: Update to 2.8.1.
     new ee29912569 gnu: r-calculus: Update to 0.3.2.
     new e99491d81d gnu: r-mlr3pipelines: Update to 0.4.0.
     new fa7161fcf9 gnu: r-ragg: Update to 1.2.1.
     new e4c498ff6d gnu: r-pkgdown: Update to 2.0.1.
     new 086fb6d56d gnu: r-stars: Update to 0.5-5.
     new 540a0763fc gnu: r-vroom: Update to 1.5.7.
     new 11282df15e gnu: r-opencpu: Update to 2.2.6.
     new eca189bf5b gnu: r-exactextractr: Update to 0.7.2.
     new 7534d44e6d gnu: r-stringfish: Update to 0.15.5.
     new 62c7050cef gnu: r-qs: Update to 0.25.2.
     new 1b48f85034 gnu: r-rgeos: Update to 0.5-9.
     new 8f9b7ee002 gnu: r-paws-common: Update to 0.3.15.
     new 593667a8c0 gnu: r-ggh4x: Update to 0.2.1.
     new b77de3ca6f gnu: r-matrix: Update to 1.4-0.
     new 4a7afefa85 gnu: r-digest: Update to 0.6.29.
     new a6a02a955e gnu: r-stringi: Update to 1.7.6.
     new ccd7d9f8c2 gnu: r-dbi: Update to 1.1.2.
     new 26d47e68fa gnu: r-bh: Update to 1.78.0-0.
     new b4a2db20ba gnu: r-knitr: Update to 1.37.
     new 8593846517 gnu: r-memoise: Update to 2.0.1.
     new ffbd40eee6 gnu: r-testthat: Update to 3.1.1.
     new d35ac14572 gnu: r-xml2: Update to 1.3.3.
     new a68ac65910 gnu: r-backports: Update to 1.4.1.
     new 861ae819e3 gnu: r-devtools: Update to 2.4.3.
     new 57392d40bf gnu: r-withr: Update to 2.4.3.
     new ff2e3350fa gnu: r-readr: Update to 2.1.1.
     new 8f1288c2f7 gnu: r-rcpparmadillo: Update to 0.10.7.5.0.
     new db2d774fd3 gnu: r-rsqlite: Update to 2.2.9.
     new 0858d957ba gnu: r-irlba: Update to 2.3.5.
     new 266562da22 gnu: r-mclust: Update to 5.4.9.
     new e77c46f654 gnu: r-deoptimr: Update to 1.0-10.
     new fe816ea9f5 gnu: r-sn: Update to 2.0.1.
     new afe3f9f51d gnu: r-cairo: Update to 1.5-14.
     new c6e46ce44b gnu: r-bayesfactor: Update to 0.9.12-4.3.
     new 33710d4e39 gnu: r-gld: Update to 2.6.4.
     new 55429348f1 gnu: r-exact: Update to 3.1.
     new 36d2a03edc gnu: r-desctools: Update to 0.99.44.

The 138 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm                      |  44 +-
 gnu/packages/cran.scm                              | 553 +++++++++++----------
 .../patches/r-httpuv-1.5.5-unvendor-libuv.patch    |  34 +-
 gnu/packages/statistics.scm                        | 113 +++--
 guix/upstream.scm                                  |   8 +-
 tests/upstream.scm                                 | 166 ++++++-
 6 files changed, 596 insertions(+), 322 deletions(-)