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04/32: gnu: Add python-nibabel.
From: |
guix-commits |
Subject: |
04/32: gnu: Add python-nibabel. |
Date: |
Wed, 16 Feb 2022 11:39:29 -0500 (EST) |
nckx pushed a commit to branch wip-python-mne
in repository guix.
commit bc17ffc9f356b51f8cfca182608d2b516ce9e207
Author: Vivien Kraus <vivien@planete-kraus.eu>
AuthorDate: Thu Jan 20 17:38:47 2022 +0100
gnu: Add python-nibabel.
* gnu/packages/python-science.scm (python-nibabel): New variable.
---
gnu/packages/python-science.scm | 51 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 51 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 78c84f4fe6..c659b004ed 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -55,6 +55,7 @@
#:use-module (gnu packages sphinx)
#:use-module (gnu packages statistics)
#:use-module (gnu packages time)
+ #:use-module (gnu packages version-control)
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
@@ -1104,3 +1105,53 @@ European Data Format}. @dfn{BDF} is the
(synopsis "I/O support for EEGLAB files in Python")
(description "This project provides I/O support for EEGLAB files in
Python.")
(license license:bsd-3)))
+
+(define-public python-nibabel
+ (package
+ (name "python-nibabel")
+ (version "3.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "nibabel" version))
+ (sha256
+ (base32
+ "17n23w7y0hiz2vma5si7wy184d59bp14zd8nr6hi203ldd1gjbsd"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "pytest" "--pyargs" "nibabel")))))))
+ (propagated-inputs (list python-numpy python-packaging))
+ (native-inputs (list python-coverage
+ python-gitpython
+ python-pytest
+ python-pytest-cov
+ python-pytest-doctestplus
+ python-twine))
+ (home-page "https://nipy.org/nibabel/")
+ (synopsis "Access a multitude of neuroimaging data formats")
+ (description
+ "This package provides read +/- write access to some common
+medical and neuroimaging file formats, including:
+@url{http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm,
+ANALYZE} (plain, SPM99, SPM2 and later),
+@url{https://www.nitrc.org/projects/gifti, GIFTI},
+@url{http://nifti.nimh.nih.gov/nifti-1/, NIfTI1},
+@url{http://nifti.nimh.nih.gov/nifti-2/, NIfTI2},
+@url{https://www.nitrc.org/projects/cifti/, CIFTI-2},
+@url{https://en.wikibooks.org/wiki/MINC/Reference/MINC1_File_Format_Reference,
+MINC1},
+@url{https://en.wikibooks.org/wiki/MINC/Reference/MINC2.0_File_Format_Reference,
+MINC2}, @url{https://afni.nimh.nih.gov/pub/dist/src/README.attributes, AFNI
+BRIK/HEAD},
+@url{https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat, MGH} and
+@url{http://xmedcon.sourceforge.net/Docs/Ecat, ECAT} as well as Philips
+PAR/REC. We can read and write @url{https://surfer.nmr.mgh.harvard.edu/,
+FreeSurfer} geometry, annotation and morphometry files. There is some very
+limited support for @url{http://medical.nema.org/, DICOM}. NiBabel is the
+successor of @url{http://niftilib.sourceforge.net/pynifti/, PyNIfTI}.")
+ (license license:expat)))
- 07/32: gnu: Add python-makefun., (continued)
- 07/32: gnu: Add python-makefun., guix-commits, 2022/02/16
- 14/32: gnu: Add python-pytest-cases., guix-commits, 2022/02/16
- 27/32: gnu: vtk: Also install a .egg-info., guix-commits, 2022/02/16
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- 21/32: gnu: Add python-dipy., guix-commits, 2022/02/16
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- 03/32: gnu: Add python-eeglabio., guix-commits, 2022/02/16
- 16/32: gnu: Add python-pytest-steps., guix-commits, 2022/02/16
- 32/32: gnu: Add python-mne., guix-commits, 2022/02/16
- 12/32: gnu: Add a test-less python-pytest-cases., guix-commits, 2022/02/16
- 04/32: gnu: Add python-nibabel.,
guix-commits <=
- 11/32: gnu: Add a test-less python-pytest-steps., guix-commits, 2022/02/16
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- 23/32: gnu: Add python-pyperf., guix-commits, 2022/02/16
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- 06/32: gnu: Add python-flake8-array-spacing., guix-commits, 2022/02/16
- 15/32: gnu: Add python-pytest-harvest., guix-commits, 2022/02/16
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- 25/32: gnu: Add python-scooby., guix-commits, 2022/02/16
- 01/32: gnu: Add python-imageio-ffmpeg., guix-commits, 2022/02/16
- 10/32: gnu: Add a test-less python-pytest-harvest., guix-commits, 2022/02/16