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03/03: gnu: Add r-adductomicsr.
From: |
guix-commits |
Subject: |
03/03: gnu: Add r-adductomicsr. |
Date: |
Mon, 2 May 2022 09:19:19 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 9c19db8c1d848412697b0b47ff6e878248de1944
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Sun Apr 17 17:10:46 2022 +0200
gnu: Add r-adductomicsr.
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f0462a5368..2db0ab3752 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1899,6 +1899,51 @@ but which also provides utilities which may be useful
for other platforms.")
;; GPLv3.
(license license:gpl3)))
+(define-public r-adductomicsr
+ (package
+ (name "r-adductomicsr")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "adductomicsR" version))
+ (sha256
+ (base32
+ "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"))))
+ (properties `((upstream-name . "adductomicsR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-adductdata
+ r-ade4
+ r-annotationhub
+ r-bootstrap
+ r-data-table
+ r-dosnow
+ r-dplyr
+ r-dt
+ r-experimenthub
+ r-fastcluster
+ r-foreach
+ r-fpc
+ r-mzr
+ r-orgmassspecr
+ r-pastecs
+ r-pracma
+ r-rcppeigen
+ r-reshape2
+ r-rvest
+ r-smoother
+ r-zoo))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/adductomicsR")
+ (synopsis "Processing of adductomic mass spectral datasets")
+ (description
+ "This package @code{adductomicsR} processes data generated by the
+@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted
+peptides from spectra that has been corrected for mass drift and retention
+time drift and quantifies level mass spectral peaks from @dfn{first stage of
+mass spectrometry} (MS1) data.")
+ (license license:artistic2.0)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")