04/11: gnu: tabixpp: Use #:make-flags.

[guix-commits]

efraim pushed a commit to branch master
in repository guix.

commit a99054795240cb7c17754816127a86d764fe76db
Author: Arun Isaac <arunisaac@systemreboot.net>
AuthorDate: Tue Apr 26 18:16:32 2022 +0530

    gnu: tabixpp: Use #:make-flags.
    
    * gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the
    build phase. Move the required make arguments to #:make-flags. Add
    build-libraries phase.
    
    Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/bioinformatics.scm | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ed4836998b..35e575d17c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14298,18 +14298,18 @@ mutations from scRNA-Seq data.")
    (inputs
     (list htslib zlib))
    (arguments
-    (list #:tests? #f ; There are no tests to run.
+    (list #:make-flags #~(list "HTS_HEADERS="
+                               (string-append "HTS_LIB="
+                                              (search-input-file %build-inputs
+                                                                 
"/lib/libhts.a"))
+                               "INCLUDES=")
+          #:tests? #f ; There are no tests to run.
           #:phases
           #~(modify-phases %standard-phases
               (delete 'configure) ; There is no configure phase.
-              ;; The build phase needs overriding the location of htslib.
-              (replace 'build
+              ;; Build shared and static libraries.
+              (add-after 'build 'build-libraries
                 (lambda* (#:key inputs #:allow-other-keys)
-                  (invoke "make"
-                          (string-append "HTS_LIB=" (search-input-file inputs 
"/lib/libhts.a"))
-                          (string-append "INCLUDES= -I" 
(search-input-directory inputs "/include/htslib"))
-                          "HTS_HEADERS=" ; No need to check for headers here.
-                          (string-append "LIBPATH=-L. -L" 
(search-input-directory inputs "/include")))
                   (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" 
"-lhts")
                   (invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
               (replace 'install