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02/02: gnu: pigx-sars-cov-2: Fix build.
From: |
guix-commits |
Subject: |
02/02: gnu: pigx-sars-cov-2: Fix build. |
Date: |
Sat, 28 May 2022 18:40:13 -0400 (EDT) |
rekado pushed a commit to branch wip-r
in repository guix.
commit cb115ba7220d7db12ccb761a1261a778ec583ae2
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sun May 29 00:39:19 2022 +0200
gnu: pigx-sars-cov-2: Fix build.
* gnu/packages/bioinformatics.scm (pigx-sars-cov-2)[arguments]: Add
'autoreconf phase to patch build system.
---
gnu/packages/bioinformatics.scm | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0945bddbe7..1d8397c1aa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11359,6 +11359,13 @@ based methods.")
`(#:tests? #f ;requires huge kraken database
#:phases
(modify-phases %standard-phases
+ (add-before 'bootstrap 'autoreconf
+ (lambda _
+ ;; https://github.com/BIMSBbioinfo/pigx_sars-cov-2/issues/123
+ (substitute* "m4/ax_r_package.m4"
+ (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
+ "if(system.file(package=\"PKG\") == \"\")"))
+ (invoke "autoreconf" "-vif")))
(add-before 'configure 'set-PYTHONPATH
(lambda _
(setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH")))))))