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branch master updated: gnu: pigx-rnaseq: Update to 0.1.0.


From: guix-commits
Subject: branch master updated: gnu: pigx-rnaseq: Update to 0.1.0.
Date: Wed, 01 Jun 2022 05:12:44 -0400

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new cd95d7ddd1 gnu: pigx-rnaseq: Update to 0.1.0.
cd95d7ddd1 is described below

commit cd95d7ddd180f244059e1b3585b2f8ba4c9d5024
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jun 1 11:07:27 2022 +0200

    gnu: pigx-rnaseq: Update to 0.1.0.
    
    * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0.
    [arguments]: Remove phase 'patch-knitr.
---
 gnu/packages/bioinformatics.scm | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9811a0b9e2..1ffac1a0ca 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10441,7 +10441,7 @@ once.  This package provides tools to perform Drop-seq 
analyses.")
 (define-public pigx-rnaseq
   (package
     (name "pigx-rnaseq")
-    (version "0.0.21")
+    (version "0.1.0")
     (source (origin
               (method url-fetch)
               (uri (string-append 
"https://github.com/BIMSBbioinfo/pigx_rnaseq/";
@@ -10449,19 +10449,12 @@ once.  This package provides tools to perform 
Drop-seq analyses.")
                                   "/pigx_rnaseq-" version ".tar.gz"))
               (sha256
                (base32
-                "0367jn73vja94ch9fwgaiwy62rbxfzc85xz6blzbkjyzhph1r173"))))
+                "0acdjimfb9ywba8zsv7lavv436pmcmp8ra683h11wr4s3681pqk8"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-tests? #f             ; not supported
        #:phases
        (modify-phases %standard-phases
-         ;; knitr 0.39 changes the default behavior of how graphics are
-         ;; included.
-         (add-after 'unpack 'patch-knitr
-           (lambda _
-             (substitute* "scripts/runDeseqReport.R"
-               (("outFile <- paste0" m)
-                (string-append "options(knitr.graphics.rel_path = FALSE)\n" 
m)))))
          ;; "test.sh" runs the whole pipeline, which takes a long time and
          ;; might fail due to OOM.  The MultiQC is also resource intensive.
          (add-after 'unpack 'disable-resource-intensive-test



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