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branch master updated: gnu: pigx-rnaseq: Update to 0.1.0.
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guix-commits |
Subject: |
branch master updated: gnu: pigx-rnaseq: Update to 0.1.0. |
Date: |
Wed, 01 Jun 2022 05:12:44 -0400 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new cd95d7ddd1 gnu: pigx-rnaseq: Update to 0.1.0.
cd95d7ddd1 is described below
commit cd95d7ddd180f244059e1b3585b2f8ba4c9d5024
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jun 1 11:07:27 2022 +0200
gnu: pigx-rnaseq: Update to 0.1.0.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0.
[arguments]: Remove phase 'patch-knitr.
---
gnu/packages/bioinformatics.scm | 11 ++---------
1 file changed, 2 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9811a0b9e2..1ffac1a0ca 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10441,7 +10441,7 @@ once. This package provides tools to perform Drop-seq
analyses.")
(define-public pigx-rnaseq
(package
(name "pigx-rnaseq")
- (version "0.0.21")
+ (version "0.1.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@@ -10449,19 +10449,12 @@ once. This package provides tools to perform
Drop-seq analyses.")
"/pigx_rnaseq-" version ".tar.gz"))
(sha256
(base32
- "0367jn73vja94ch9fwgaiwy62rbxfzc85xz6blzbkjyzhph1r173"))))
+ "0acdjimfb9ywba8zsv7lavv436pmcmp8ra683h11wr4s3681pqk8"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-tests? #f ; not supported
#:phases
(modify-phases %standard-phases
- ;; knitr 0.39 changes the default behavior of how graphics are
- ;; included.
- (add-after 'unpack 'patch-knitr
- (lambda _
- (substitute* "scripts/runDeseqReport.R"
- (("outFile <- paste0" m)
- (string-append "options(knitr.graphics.rel_path = FALSE)\n"
m)))))
;; "test.sh" runs the whole pipeline, which takes a long time and
;; might fail due to OOM. The MultiQC is also resource intensive.
(add-after 'unpack 'disable-resource-intensive-test
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