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branch master updated: gnu: pigx-scrnaseq: Update to 1.1.9.
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guix-commits |
Subject: |
branch master updated: gnu: pigx-scrnaseq: Update to 1.1.9. |
Date: |
Wed, 01 Jun 2022 06:58:11 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new b540e5e6bb gnu: pigx-scrnaseq: Update to 1.1.9.
b540e5e6bb is described below
commit b540e5e6bba6e0047864abcc3a6dfec46ff6cd32
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jun 1 12:57:22 2022 +0200
gnu: pigx-scrnaseq: Update to 1.1.9.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
---
gnu/packages/bioinformatics.scm | 18 ++----------------
1 file changed, 2 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 92d92e7d02..931eea7022 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10679,7 +10679,7 @@ methylation and segmentation.")
(define-public pigx-scrnaseq
(package
(name "pigx-scrnaseq")
- (version "1.1.8")
+ (version "1.1.9")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
@@ -10687,23 +10687,11 @@ methylation and segmentation.")
"/pigx_scrnaseq-" version ".tar.gz"))
(sha256
(base32
- "1lc42hl8mz95kilh0z39s3wnv092mhm6vl2i394n0yfvdzk4f885"))))
+ "0adx7877c3lhlrzfid76i8bc829wcmzvrm0jx47gyid8mxqb7vqs"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
- (add-before 'bootstrap 'autoreconf
- (lambda _
- ;; This was fixed in commit
- ;; c4ac067438ae9312b5786a72e2bfb3d795e3ec8a, but there is no
- ;; release with this fix.
- (call-with-output-file "VERSION"
- (lambda (port) (display ,version port)))
- ;; https://github.com/BIMSBbioinfo/pigx_scrnaseq/issues/59
- (substitute* "m4/ax_r_package.m4"
- (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
- "if(system.file(package=\"PKG\") == \"\")"))
- (invoke "autoreconf" "-vif")))
(add-before 'configure 'set-additional-environment-variables
(lambda _
;; Needed because of loompy
@@ -10752,8 +10740,6 @@ methylation and segmentation.")
r-singlecellexperiment
r-stringr
r-yaml))
- (native-inputs
- (list autoconf automake))
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
(description
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