branch staging updated (091eb323ba -> 622545de6c)

[guix-commits]

civodul pushed a change to branch staging
in repository guix.

    from 091eb323ba Merge branch 'master' into staging
     add 525f1013d1 gnu: cairomm: Update to 1.16.1.
     add e31ab8c248 gnu: cairomm: Remove input labels.
     add 0e0296af4e gnu: perl-dbi, timescaledb: Fix typo in description.
     add 5011866692 guix: platform: Fix typo in lookup-platform-by-target.
     add 5124d0dbe0 gnu: sudo: Fix build on aarch64.
     add e3873ed241 gnu: emacs-org: Update to 9.5.4.
     add 65f66245d4 gnu: synthv1: Update to 0.9.26.
     add b40d7fd001 gnu: drumkv1: Update to 0.9.26.
     add a73f88499e gnu: samplv1: Update to 0.9.26.
     add 424a14a386 gnu: padthv1: Update to 0.9.26.
     add 15f2098412 gnu: libnftnl: Update to 1.2.2.
     add 3783a7b8e4 gnu: nftables: Update to 1.0.4.
     add 7fe382892a doc: Expand ‘setuid-root’-only references.
     add ce21522706 gnu: sudo: Update to 1.9.11p1.
     add 62b2d37e51 gnu: retux: Update to 1.6.1.
     add 0a58c7c1c0 gnu: restinio: Update to 0.6.15.
     add 48a191c15d gnu: java-plexus-component-metadata: Fix package.
     add 731f55aa8d gnu: epiphany: Update to 42.2.
     add 3f922e229b gnu: epiphany: Use new coding style.
     add 8ef651b44c gnu: ngspice: Build with readline support.
     add 68db023498 gnu: lightdm: Fix build.
     add 4d1fab45ee gnu: linux-libre: Update to 5.17.13.
     add 3e372805e3 gnu: linux-libre 5.14: Update to 5.14.45.
     add cd21924d92 gnu: linux-libre 5.10: Update to 5.10.120.
     add ed258e3871 gnu: linux-libre 5.4: Update to 5.4.197.
     add bde8e3c83a gnu: linux-libre 4.19: Update to 4.19.246.
     add da5c1e8246 gnu: linux-libre 4.14: Update to 4.14.282.
     add e14918f402 gnu: linux-libre 4.9: Update to 4.9.317.
     add b68c87f86a gnu: Add PyGLM.
     add 5f1f8a9374 gnu: Add python-freetype-py.
     add 7db8fe3e40 gnu: Add GNOME Plots.
     add 349f730e0e gnu: cl-quri: Update to 0.5.0.
     add e22b172522 gnu: vim-fugitive: Update to 3.7.
     add 4856759ad4 gnu: emacs-geiser: Update to 0.23.2.
     add 70e30ff40b gnu: emacs-geiser-racket: Update to 1.0 and patch racket's 
path.
     add 911da82eda gnu: emacs-geiser-gauche: Update to 0.14-0.96fa06a and 
patch gauche's path.
     add ad493a6fba gnu: emacs-geiser-guile: Update to 0.23.2 and patch guile's 
path.
     add 8161c61ae4 gnu: packcc: Update to 1.7.2.
     add e3de5d6701 gnu: pcre: Update with new source URI.
     add e1383bfa6a gnu: universal-ctags: Update to 5.9.20220605.0.
     add e92508baeb gnu: vtk@7: Do not embed running kernel version.
     add e1b72334c8 Revert "gnu: uim: Build reproducibly."
     add fa924a9726 gnu: rsyslog: Update to 8.2204.1.
     add 0648dc9572 gnu: rsyslog: Include rscryutil.
     add f2e570ca8a gnu: vtk@7: Simplify regular expression.
     add 8d8d644277 gnu: rng-tools: Remove input labels.
     add 01596f40a9 gnu: readstat: Update to 1.1.8.
     add 7795a5dd6b gnu: python-miniupnpc: Do not embed running kernel version.
     add b483ef1a88 gnu: python-pybedtools: Update to 0.9.0.
     add 35eddb6ee4 gnu: twm: Update to 1.0.12.
     add 50a0cb394d gnu: xorg-sgml-doctools: Update to 1.12.
     add 67c4b49654 gnu: xlsfonts: Update to 1.0.7.
     add 6b71d6e808 gnu: xf86-video-dummy: Update to 0.4.0.
     add e3734fa9b8 gnu: xf86-video-amdgpu: Update to 22.0.0.
     add 9015589a22 gnu: xf86-input-libinput: Update to 1.2.1.
     add 8cc2c048c2 gnu: xdpyinfo: Update to 1.3.3.
     add 8e84eb0125 gnu: xcalc: Update to 1.1.1.
     add b4186b7e18 gnu: xauth: Update to 1.1.2.
     add d998f5ad86 gnu: mkfontscale: Update to 1.2.2.
     add 9d2ef7344e gnu: python-pydevd: Skip tests failing due to YAMA.
     add 3e6bc1edca gnu: python-debugpy: Disable tests.
     add 0f04db3262 gnu: nar-herder: Update to 0-8.042f49e.
     add 9ea5a66e30 gnu: Add emacs-platformio-mode.
     add 888e2878a7 gnu: emacs-modus-themes: Update to 2.4.1.
     add 623f623209 gnu: python-pkginfo: Update to 1.8.3.
     add fb67ebca3e gnu: reproc: Update to 14.2.4.
     add 2119577052 gnu: inotify-tools: Update to 3.22.6.0.
     add d080adc416 gnu: multitail: Update to 6.5.2.
     add 7b43614986 gnu: python-igraph: Update to 0.9.11.
     add 9ae55f8482 gnu: notmuch: Update to 0.36.
     add 4cb22c07d2 gnu: python-notmuch: Remove trailing #t from phase.
     add cb475aea08 gnu: alpine: Update to 2.26.
     add b76a0cbe49 gnu: claws-mail: Update to 4.1.0.
     add 583a587ea3 gnu: foot: Update to 1.12.1.
     add 81cc8f1251 gnu: r-prereg: Add TeXLive dependencies.
     add 3724867bdb gnu: slurm-drmaa: Update to 1.1.3.
     add e89bfceed5 gnu: linux-libre: Update to 5.17.14.
     add 84f999ae1b gnu: linux-libre 5.15: Update to 5.15.46.
     add 30967b0dc4 gnu: linux-libre 5.10: Update to 5.10.121.
     add d859d8873c doc: Update example of a minimalistic home environment.
     add fa0ead00d9 gnu: Add go-sigs-k8s-io-yaml.
     add 8d4a69eb90 gnu: Add go-github-com-google-go-jsonnet.
     add c09cc71724 gnu: direnv: Update to 2.31.0.
     add f2d9d283b6 gnu: meshlab: Update to 2022.02.
     add 010426e2c3 gnu: emacs-dimmer: Update to 0.4.2-1-2f915b1.
     add 2f3dec3de7 gnu: tch-ipv6: Build reproducibly.
     add 9f01229c95 gnu: c-blosc: Update to 1.21.1.
     add 495c248920 gnu: c-blosc: Omit static library.
     add 2d80b869f0 gnu: c-blosc: Remove bundled libraries from source.
     add 34c7c922f5 gnu: c-blosc: Remove input labels.
     add 7c52cad046 pull: Fail if cache directory ownership is suspect.
     add a7255dd13f gnu: oneko: Remove trailing #t from phases.
     add 8c2c5c2c9c gnu: oneko: Edit description.
     add 1023bd85cc gnu: Add nmon.
     add ddd265b033 gnu: galera: Update to 26.4.12.
     add b8edfdb008 gnu: qtox: Update to 1.17.6.
     add 85b4dabd94 services: jami: Modernize to adjust to Shepherd 0.9+ 
changes.
     add 8994e13b9f least-authority: Fix typo.
     add 8649ac5eaa services: jami-configuration: Rename 'jamid' field to 
'libjami'.
     add a99015c878 system: Align zram priority with swap-space spec to clarify.
     add 2d7548f0cf gnu: Add emacs-org-auto-tangle.
     add f0fa2b25ba gnu: python-pyodbc: Remove precompiled .pyc files from 
source.
     add 07edc13f04 gnu: python-pyodbc: Document the test situation.
     add 64b12a1abf gnu: python-pyodbc: Update to 4.0.32.
     add 289b521584 gnu: python-pyodbc-c: Don't use unstable tarball.
     add 89c7a2c891 gnu: python-pyodbc-c: Update to 3.1.5.
     add c794df8490 gnu: python-pyodbc-c: Fix metadata.
     add c23d4871a6 gnu: irssi: Update to 1.4.1.
     add 1643402950 gnu: offlate: Update to 0.6.1.
     add 898511205c gnu: irssi: Edit description.
     add b8686f1bfc gnu: python-pyodbc-c: Fix comment.
     add 7d00cdf44d gnu: diffoscope: Update to 216.
     add cd81b3bdfd gnu: memkind: Update to 1.13.0.
     add 67a78c0ad6 gnu: ndctl: Update to 73.
     add aef64b9c45 gnu: emacs-kind-icon: Update to 0.1.5.
     add 66c5e40762 gnu: emacs-d-mode: Update to 2.0.12.
     add 4fc248ada2 gnu: emacs-ghub: Update to 3.5.6.
     add 1dc22f19e8 gnu: emacs-undo-tree: Update to 0.8.2.
     add 75eae3fd78 gnu: emacs-rainbow-mode: Update to 1.0.6.
     add 965d54e344 gnu: java-plexus-component-metadata: Fix package.
     add f5899fe58b gnu: r-deepsnv: Update to 1.42.1.
     add 15e26f97d9 gnu: r-biocparallel: Update to 1.30.3.
     add 1ecac84c73 gnu: r-genomicfeatures: Update to 1.48.3.
     add 7a344aa9e2 gnu: r-keggrest: Update to 1.36.2.
     add 46aab4d33d gnu: r-zellkonverter: Update to 1.6.2.
     add 8ed8c8b8da gnu: r-chippeakanno: Update to 3.30.1.
     add 640b45d73c gnu: r-monocle: Update to 2.24.1.
     add 41435e0e1c gnu: r-clusterprofiler: Update to 4.4.2.
     add a76b657d93 gnu: r-rsubread: Update to 2.10.2.
     add a12ec47cbd gnu: r-universalmotif: Update to 1.14.1.
     add 541823b318 gnu: r-hdf5array: Update to 1.24.1.
     add 2a34333d0c guix: packages: Add %32bit-supported-systems, 
%64bit-supported-systems.
     add 3cbef19a90 gnu: zig: Limit to 64bit systems.
     add e22b55f0b9 gnu: llvm-14: Fix configure-flags for cross-compiling.
     add a473d74ff1 gnu: Add emacs-corfu-terminal.
     add 9c036f2dfb gnu: Add emacs-corfu-doc-terminal.
     new 622545de6c Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 doc/guix.texi                                      |  34 +-
 doc/he-config-bare-bones.scm                       |  11 +-
 gnu/build/dbus-service.scm                         | 213 +++++++++
 gnu/build/jami-service.scm                         | 390 +++-------------
 gnu/local.mk                                       |   4 +-
 gnu/packages/admin.scm                             |  75 ++-
 gnu/packages/bioconductor.scm                      |  46 +-
 gnu/packages/bioinformatics.scm                    |  13 +-
 gnu/packages/c.scm                                 |   9 +-
 gnu/packages/code.scm                              |   8 +-
 gnu/packages/compression.scm                       |  33 +-
 gnu/packages/cpp.scm                               |   7 +-
 gnu/packages/cran.scm                              |  22 +-
 gnu/packages/databases.scm                         |  52 ++-
 gnu/packages/diffoscope.scm                        |   4 +-
 gnu/packages/disk.scm                              |  29 +-
 gnu/packages/display-managers.scm                  |   4 +-
 gnu/packages/emacs-xyz.scm                         | 284 ++++++++----
 gnu/packages/engineering.scm                       |  56 +--
 gnu/packages/games.scm                             |   9 +-
 gnu/packages/glib.scm                              |  19 +-
 gnu/packages/gnome-xyz.scm                         |  84 ++++
 gnu/packages/gnome.scm                             | 112 +++--
 gnu/packages/golang.scm                            |  59 +++
 gnu/packages/graph.scm                             |   6 +-
 gnu/packages/gtk.scm                               |  25 +-
 gnu/packages/image-processing.scm                  |  11 +-
 gnu/packages/irc.scm                               |  17 +-
 gnu/packages/java.scm                              |  18 +-
 gnu/packages/linux.scm                             |  51 +--
 gnu/packages/lisp-xyz.scm                          |   6 +-
 gnu/packages/llvm.scm                              |   6 +-
 gnu/packages/logging.scm                           |  64 ++-
 gnu/packages/mail.scm                              |  21 +-
 gnu/packages/messaging.scm                         |   4 +-
 gnu/packages/music.scm                             |  28 +-
 gnu/packages/networking.scm                        |  10 +-
 gnu/packages/package-management.scm                |   6 +-
 gnu/packages/parallel.scm                          |   6 +-
 .../patches/alpine-fix-privacy-policy-crash.patch  |  39 --
 .../patches/epiphany-update-libportal-usage.patch  |  53 ---
 gnu/packages/patches/nftables-fix-makefile.patch   |  34 --
 gnu/packages/pcre.scm                              |   6 +-
 gnu/packages/python-science.scm                    |  27 ++
 gnu/packages/python-xyz.scm                        | 106 +++--
 gnu/packages/shellutils.scm                        |   7 +-
 gnu/packages/statistics.scm                        |   4 +-
 gnu/packages/terminals.scm                         |   4 +-
 gnu/packages/toys.scm                              |  18 +-
 gnu/packages/vim.scm                               |   4 +-
 gnu/packages/xorg.scm                              |  59 ++-
 gnu/packages/zig.scm                               |   4 +
 gnu/services/linux.scm                             |  29 +-
 gnu/services/telephony.scm                         | 510 ++++++++++-----------
 gnu/tests/telephony.scm                            | 412 ++++++++---------
 guix/least-authority.scm                           |   2 +-
 guix/packages.scm                                  |  16 +-
 guix/platform.scm                                  |   2 +-
 guix/scripts/pull.scm                              |  28 ++
 59 files changed, 1778 insertions(+), 1442 deletions(-)
 create mode 100644 gnu/build/dbus-service.scm
 delete mode 100644 gnu/packages/patches/alpine-fix-privacy-policy-crash.patch
 delete mode 100644 gnu/packages/patches/epiphany-update-libportal-usage.patch
 delete mode 100644 gnu/packages/patches/nftables-fix-makefile.patch