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08/09: gnu: Add python-arboreto.
From: |
guix-commits |
Subject: |
08/09: gnu: Add python-arboreto. |
Date: |
Thu, 16 Jun 2022 09:27:11 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 3535d8dc5ae3116d8c3bedf0d5c920b19ba41cc5
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Jun 16 15:18:17 2022 +0200
gnu: Add python-arboreto.
* gnu/packages/bioinformatics.scm (python-arboreto): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6dde6b6976..e6b14069ec 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13424,6 +13424,39 @@ files.")
pycisTarget and SCENIC.")
(license license:gpl3+)))
+(define-public python-arboreto
+ (package
+ (name "python-arboreto")
+ (version "0.1.6")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/aertslab/arboreto")
+ (commit "2f475dca08f47a60acc2beb8dd897e77b7495ca4")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0l0im8ay7l2d24f7vaha454vsaha9s36bfqhbijg3b8ir8apsd7l"))))
+ (build-system python-build-system)
+ ;; Lots of tests fail because python-distributed fails to start the
+ ;; "Nanny" process.
+ (arguments '(#:tests? #false))
+ (propagated-inputs
+ (list python-bokeh
+ python-dask
+ python-distributed
+ python-numpy
+ python-pandas
+ python-scikit-learn
+ python-scipy
+ python-tornado-6))
+ (home-page "https://github.com/aertslab/arboreto")
+ (synopsis "Gene regulatory network inference using tree-based ensemble
regressors")
+ (description
+ "This package implements scalable gene regulatory network inference using
+tree-based ensemble regressors.")
+ (license license:bsd-3)))
+
(define-public vbz-compression
(package
(name "vbz-compression")
- branch master updated (59ec9e3f3e -> f700223c3b), guix-commits, 2022/06/16
- 02/09: gnu: Add python-pyarrow-0.16., guix-commits, 2022/06/16
- 04/09: gnu: Add python-interlap., guix-commits, 2022/06/16
- 05/09: gnu: Add python-multiprocessing-on-dill., guix-commits, 2022/06/16
- 08/09: gnu: Add python-arboreto.,
guix-commits <=
- 03/09: gnu: python-locket: Update to 1.0.0., guix-commits, 2022/06/16
- 09/09: gnu: Add pyscenic., guix-commits, 2022/06/16
- 06/09: gnu: Add python-bokeh., guix-commits, 2022/06/16
- 01/09: gnu: Add apache-arrow-0.16., guix-commits, 2022/06/16
- 07/09: gnu: Add python-ctxcore., guix-commits, 2022/06/16