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branch master updated: gnu: Add r-millefy.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-millefy. |
Date: |
Mon, 01 Aug 2022 09:21:57 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 8d7a721400 gnu: Add r-millefy.
8d7a721400 is described below
commit 8d7a7214001967dd3b8732acc04da87a5687c91b
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Wed Jul 27 10:17:42 2022 +0200
gnu: Add r-millefy.
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
---
gnu/packages/bioinformatics.scm | 37 ++++++++++++++++++++++++++++++++++++-
1 file changed, 36 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4a8a743eba..edbae757e2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11,7 +11,7 @@
;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
-;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu
<madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu
<madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
@@ -7525,6 +7525,41 @@ of transcriptional heterogeneity among single cells.")
;; See https://github.com/hms-dbmi/scde/issues/38
(license license:gpl2)))
+(define-public r-millefy
+ (package
+ (name "r-millefy")
+ (version "0.1.9-beta")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/yuifu/millefy")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl"))))
+ (properties `((upstream-name . "millefy")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-data-table
+ r-destiny
+ r-dplyr
+ r-genomicranges
+ r-iranges
+ r-magrittr
+ r-rsamtools
+ r-rtracklayer
+ r-tidyr))
+ (home-page "https://github.com/yuifu/millefy")
+ (synopsis "Make millefy plot with single-cell RNA-seq data")
+ (description "@code{Millefy} is a tool for visualizing read coverage of
+@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By
+dynamically and automatically reorder single cells based on locus-specific
+pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read
coverage
+of scRNA-seq data.")
+ (license license:expat)))
+
(define-public r-misha
(package
(name "r-misha")
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