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16/18: gnu: mumps: Update to 5.5.1
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From: |
guix-commits |
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Subject: |
16/18: gnu: mumps: Update to 5.5.1 |
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Date: |
Fri, 5 Aug 2022 09:28:56 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit b70d6ce6273a377963f706454640d88edbbd4208
Author: FELŠÖCI Marek <marek@felsoci.sk>
AuthorDate: Thu Aug 4 19:08:39 2022 +0200
gnu: mumps: Update to 5.5.1
* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as
the build configuration has been updated upstream. Allow for further optimized
BLR compression by specifying the -DBLR_MT build option.
* gnu/packages/patches/mumps-build-parallelism.patch: File removed.
* gnu/packages/patches/mumps-shared-libseq.patch: File removed.
* gnu/packages/patches/mumps-shared-mumps.patch: File removed.
* gnu/packages/patches/mumps-shared-pord.patch: File removed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
gnu/local.mk | 4 -
gnu/packages/maths.scm | 131 +++++++++++----------
gnu/packages/patches/mumps-build-parallelism.patch | 13 --
gnu/packages/patches/mumps-shared-libseq.patch | 42 -------
gnu/packages/patches/mumps-shared-mumps.patch | 63 ----------
gnu/packages/patches/mumps-shared-pord.patch | 77 ------------
6 files changed, 72 insertions(+), 258 deletions(-)
diff --git a/gnu/local.mk b/gnu/local.mk
index 0e8b7b0447..88100416d5 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1525,10 +1525,6 @@ dist_patch_DATA =
\
%D%/packages/patches/mosaicatcher-unbundle-htslib.patch \
%D%/packages/patches/mrrescue-support-love-11.patch \
%D%/packages/patches/mtools-mformat-uninitialized.patch \
- %D%/packages/patches/mumps-build-parallelism.patch \
- %D%/packages/patches/mumps-shared-libseq.patch \
- %D%/packages/patches/mumps-shared-mumps.patch \
- %D%/packages/patches/mumps-shared-pord.patch \
%D%/packages/patches/mupen64plus-ui-console-notice.patch \
%D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch \
%D%/packages/patches/musl-cross-locale.patch \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index fe93552ab9..963fc8fa6a 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -53,6 +53,7 @@
;;; Copyright © 2022 Zhu Zihao <all_but_last@163.com>
;;; Copyright © 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2022 Philip McGrath <philip@philipmcgrath.com>
+;;; Copyright © 2022 Marek Felšöci <marek@felsoci.sk>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3735,7 +3736,7 @@ language understood by many solvers.")
(define-public mumps
(package
(name "mumps")
- (version "5.2.1")
+ (version "5.5.1")
(source
(origin
(method url-fetch)
@@ -3743,11 +3744,7 @@ language understood by many solvers.")
version ".tar.gz"))
(sha256
(base32
- "0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r"))
- (patches (search-patches "mumps-build-parallelism.patch"
- "mumps-shared-libseq.patch"
- "mumps-shared-mumps.patch"
- "mumps-shared-pord.patch"))))
+ "05gs2i8b76m9flm1826fxpyfnwibjjawbmfza3ylrvj7zaag5gqs"))))
(build-system gnu-build-system)
(inputs
(list gfortran
@@ -3764,58 +3761,71 @@ language understood by many solvers.")
#:phases
(modify-phases %standard-phases
(replace 'configure
- (lambda* (#:key inputs #:allow-other-keys)
+ (lambda* (#:key inputs outputs #:allow-other-keys)
(call-with-output-file "Makefile.inc"
(lambda (port)
(format port "
-PLAT =
-LIBEXT = .a
-OUTC = -o
-OUTF = -o
-RM = rm -f~:[
-CC = gcc
-FC = gfortran
-FL = gfortran
-INCSEQ = -I$(topdir)/libseq
-LIBSEQ = $(topdir)/libseq/libmpiseq.a
-LIBSEQNEEDED = libseqneeded~;
-CC = mpicc
-FC = mpifort
-FL = mpifort~]
-AR = ar vr # rules require trailing space, ugh...
-RANLIB = ranlib
-BLASDIR = ~a
-LIBBLAS = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR)
-lopenblas~@[
-SCALAPDIR = ~a
-SCALAP = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR)
-lscalapack~]
-LIBOTHERS = -pthread
-CDEFS = -DAdd_
-PIC = -fPIC
-OPTF = -O2 -DALLOW_NON_INIT -fallow-argument-mismatch $(PIC)
-OPTL = -O2 $(PIC)
-OPTC = -O2 $(PIC)
-INCS = $(INCSEQ)
-LIBS = $(SCALAP) $(LIBSEQ)
-LPORDDIR = $(topdir)/PORD/lib
-IPORD = -I$(topdir)/PORD/include
-LPORD = $(LPORDDIR)/libpord.a
-ORDERINGSF = -Dpord~@[
-METISDIR = ~a
-IMETIS = -I$(METISDIR)/include
-LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis
-ORDERINGSF += -Dmetis~]~@[~:{
-SCOTCHDIR = ~a
-ISCOTCH = -I$(SCOTCHDIR)/include
-LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps
-lscotch -lscotcherr
-ORDERINGSF += ~a~}~]
-ORDERINGSC = $(ORDERINGSF)
-LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ)
-IORDERINGSF = $(ISCOTCH)
-IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
- (->bool (which "mpicc")) ;MPI support enabled?
- (dirname
- (dirname (search-input-file inputs
"/include/cblas.h")))
+PLAT =
+LIBEXT = .a
+LIBEXT_SHARED = .so
+OUTC = -o
+OUTF = -o
+BLASDIR = ~a
+LIBBLAS = -Wl,-rpath=$(BLASDIR)/lib -Wl,-rpath='$$ORIGIN'
+LIBBLAS += -L$(BLASDIR)/lib
+LIBBLAS += -lopenblas~@[
+SCALAPDIR = ~a
+SCALAP = -Wl,-rpath=$(SCALAPDIR)/lib -Wl,-rpath='$$ORIGIN'
+SCALAP += -L$(SCALAPDIR)/lib -lscalapack~]
+RM = rm -f~:[
+CC = gcc
+FC = gfortran
+FL = gfortran
+INCSEQ = -I$(topdir)/libseq
+LIBSEQ = $(LAPACK) -L$(topdir)/libseq -lmpiseq
+LIBSEQNEEDED = libseqneeded
+INCS = $(INCSEQ)
+LIBS = $(LIBSEQ)~;
+CC = mpicc
+FC = mpifort
+FL = mpifort
+INCPAR =
+LIBPAR = $(SCALAP) $(LAPACK)
+LIBSEQNEEDED =
+INCS = $(INCPAR)
+LIBS = $(LIBPAR)~]
+AR = ar vr # rules require trailing space, ugh...
+RANLIB = ranlib
+LIBOTHERS = -pthread
+CDEFS = -DAdd_
+PIC = -fPIC
+FPIC_OPT = $(PIC)
+RPATH_OPT = -Wl,-rpath,~a/lib
+OPTF = -O2 -fopenmp -DALLOW_NON_INIT -DBLR_MT
+OPTF += -fallow-argument-mismatch $(PIC)
+OPTL = -O2 -fopenmp $(PIC)
+OPTC = -O2 -fopenmp $(PIC)
+LPORDDIR = $(topdir)/PORD/lib
+IPORD = -I$(topdir)/PORD/include
+LPORD = $(LPORDDIR)/libpord.a
+ORDERINGSF = -Dpord~@[
+METISDIR = ~a
+IMETIS = -I$(METISDIR)/include
+LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis
+ORDERINGSF += -Dmetis~]~@[~:{
+SCOTCHDIR = ~a
+ISCOTCH = -I$(SCOTCHDIR)/include
+LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a -lesmumps
+LSCOTCH += -lscotch -lscotcherr
+ORDERINGSF += ~a~}~]
+ORDERINGSC = $(ORDERINGSF)
+LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH)
+IORDERINGSF = $(ISCOTCH)
+IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
+ (assoc-ref inputs "openblas")
(assoc-ref inputs "scalapack")
+ (->bool (which "mpicc")) ;; MPI support enabled?
+ (assoc-ref outputs "out")
(assoc-ref inputs "metis")
(match (list (assoc-ref inputs "pt-scotch")
(assoc-ref inputs "scotch"))
@@ -3828,11 +3838,14 @@ IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
"-lesmumps -lptscotch -lptscotcherr "
"-Dptscotch")))))))))
(replace 'build
- ;; By default only the d-precision library is built. Make with "all"
- ;; target so that all precision libraries and examples are built.
- (lambda _
- (invoke "make" "all"
- (format #f "-j~a" (parallel-job-count)))))
+ ;; By default only the d-precision library is built. Make with "all"
+ ;; target so that all precision libraries and examples are built.
+ ;; Then, "make allshared" builts equivalent shared libraries as
well.
+ (lambda _
+ (invoke "make" "all"
+ (format #f "-j~a" (parallel-job-count)))
+ (invoke "make" "allshared"
+ (format #f "-j~a" (parallel-job-count)))))
(replace 'check
;; Run the simple test drivers, which read test input from stdin:
;; from the "real" input for the single- and double-precision
diff --git a/gnu/packages/patches/mumps-build-parallelism.patch
b/gnu/packages/patches/mumps-build-parallelism.patch
deleted file mode 100644
index 26dd330311..0000000000
--- a/gnu/packages/patches/mumps-build-parallelism.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-Building sublibraries in parallel can lead to race conditions on the libseq
-and lipord targets.
-
---- MUMPS_5.0.0/Makefile.orig 2015-06-15 10:08:54.523146562 -0500
-+++ MUMPS_5.0.0/Makefile 2015-06-15 10:19:44.074367512 -0500
-@@ -11,6 +11,7 @@
- sexamples dexamples cexamples zexamples \
- mumps_lib requiredobj libseqneeded clean
-
-+.NOTPARALLEL:
- alllib: c z s d
- all: cexamples zexamples sexamples dexamples
-
diff --git a/gnu/packages/patches/mumps-shared-libseq.patch
b/gnu/packages/patches/mumps-shared-libseq.patch
deleted file mode 100644
index eccf528f7a..0000000000
--- a/gnu/packages/patches/mumps-shared-libseq.patch
+++ /dev/null
@@ -1,42 +0,0 @@
-Create a shared version of the sequential library, MUST BE LAST IN SERIES
-
-Index: mumps/libseq/Makefile
-===================================================================
---- mumps.orig/libseq/Makefile
-+++ mumps/libseq/Makefile
-@@ -8,15 +8,17 @@ all: libmpiseq
-
- include ../Makefile.inc
-
--libmpiseq: libmpiseq$(PLAT)$(LIBEXT)
-+libmpiseq: libmpiseq$(PLAT).a libmpiseq$(PLAT).so
-
--libmpiseq$(PLAT)$(LIBEXT): mpi.o mpic.o elapse.o
-- $(AR)$@ mpi.o mpic.o elapse.o
-+libmpiseq$(PLAT).a: mpi.o mpic.o elapse.o
-+ $(AR) $@ mpi.o mpic.o elapse.o
- $(RANLIB) $@
-+libmpiseq$(PLAT).so: mpi.o mpic.o elapse.o
-+ $(FC) -shared $^ -Wl,-soname,libmpiseq$(PLAT)-5.2.1.so -o
libmpiseq$(PLAT)-5.2.1.so -Wl,-z,defs
- .f.o:
-- $(FC) $(OPTF) -c $*.f $(OUTF)$*.o
-+ $(FC) $(OPTF) -fPIC -c $*.f $(OUTF)$*.o
- .c.o:
-- $(CC) $(OPTC) $(CDEFS) -I. -c $*.c $(OUTC)$*.o
-+ $(CC) $(OPTC) $(CDEFS) -I. -fPIC -c $*.c $(OUTC)$*.o
-
- clean:
-- $(RM) *.o *$(LIBEXT)
-+ $(RM) *.o *.a *.so
-Index: mumps/Makefile
-===================================================================
---- mumps.orig/Makefile
-+++ mumps/Makefile
-@@ -60,6 +60,7 @@ requiredobj: Makefile.inc $(LIBSEQNEEDED
-
- libseqneeded:
- (cd libseq; $(MAKE))
-+ cp libseq/lib* $(libdir)
-
- # Build the libpord.a library and copy it into $(topdir)/lib
- $(libdir)/libpord$(PLAT).a:
diff --git a/gnu/packages/patches/mumps-shared-mumps.patch
b/gnu/packages/patches/mumps-shared-mumps.patch
deleted file mode 100644
index d94ccf6ce9..0000000000
--- a/gnu/packages/patches/mumps-shared-mumps.patch
+++ /dev/null
@@ -1,63 +0,0 @@
-Create a shared version of the MUMPS library.
-
-Index: mumps/src/Makefile
-===================================================================
---- mumps.orig/src/Makefile
-+++ mumps/src/Makefile
-@@ -23,8 +23,10 @@ z:
-
- include $(topdir)/Makefile.inc
-
--mumps_lib: $(libdir)/libmumps_common$(PLAT)$(LIBEXT) \
-- $(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT)
-+mumps_lib: $(libdir)/libmumps_common$(PLAT).a \
-+ $(libdir)/libmumps_common$(PLAT).so \
-+ $(libdir)/lib$(ARITH)mumps$(PLAT).a \
-+ $(libdir)/lib$(ARITH)mumps$(PLAT).so
-
- OBJS_COMMON_MOD = \
- lr_common.o \
-@@ -167,14 +169,22 @@ OBJS_OTHER = \
- $(ARITH)tools.o\
- $(ARITH)type3_root.o
-
--$(libdir)/libmumps_common$(PLAT)$(LIBEXT): $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
-- $(AR)$@ $?
-+$(libdir)/libmumps_common$(PLAT).a: $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
-+ $(AR) $@ $?
- $(RANLIB) $@
-
--$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT): $(OBJS_MOD) $(OBJS_OTHER)
-- $(AR)$@ $?
-+$(libdir)/libmumps_common$(PLAT).so: $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
-+ $(FC) -shared $^ -Wl,-soname,libmumps_common$(PLAT)-5.2.1.so
-L$(libdir) $(LORDERINGS) -lpthread $(MPIFLIB) $(MPICLIB) $(LEXTRAS) -o
$(libdir)/libmumps_common$(PLAT)-5.2.1.so -Wl,-z,defs
-+ ln -s libmumps_common$(PLAT)-5.2.1.so $@
-+
-+$(libdir)/lib$(ARITH)mumps$(PLAT).a: $(OBJS_MOD) $(OBJS_OTHER)
-+ $(AR) $@ $?
- $(RANLIB) $@
-
-+$(libdir)/lib$(ARITH)mumps$(PLAT).so: $(OBJS_MOD) $(OBJS_OTHER)
-+ $(FC) -shared $^ -Wl,-soname,lib$(ARITH)mumps$(PLAT)-5.2.1.so
-L$(libdir) -lmumps_common$(PLAT) $(LORDERINGS) $(MPIFLIB) $(LEXTRAS)
$(LIBBLAS) $(SCALAP) $(LAPACK) -o $(libdir)/lib$(ARITH)mumps$(PLAT)-5.2.1.so
-Wl,-z,defs
-+ ln -s lib$(ARITH)mumps$(PLAT)-5.2.1.so $@
-+
- # Dependencies between modules:
- $(ARITH)mumps_load.o: $(ARITH)mumps_comm_buffer.o \
- $(ARITH)mumps_struc_def.o \
-@@ -290,13 +300,13 @@ $(OBJS_OTHER):$(OBJS_COMMON_MOD) $(OBJS_
-
- .SUFFIXES: .c .F .o
- .F.o:
-- $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -c
$*.F $(OUTF)$*.o
-+ $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include
-fPIC -c $*.F $(OUTF)$*.o
- .c.o:
-- $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC)
$(ORDERINGSC) -c $*.c $(OUTC)$*.o
-+ $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC)
$(ORDERINGSC) -fPIC -c $*.c $(OUTC)$*.o
-
- $(ARITH)mumps_c.o: mumps_c.c
- $(CC) $(OPTC) $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \
-- $(IORDERINGSC) $(ORDERINGSC) -I../include -c mumps_c.c $(OUTC)$@
-+ $(IORDERINGSC) $(ORDERINGSC) -I../include -fPIC -c mumps_c.c
$(OUTC)$@
-
-
- clean:
diff --git a/gnu/packages/patches/mumps-shared-pord.patch
b/gnu/packages/patches/mumps-shared-pord.patch
deleted file mode 100644
index d3915b0ad9..0000000000
--- a/gnu/packages/patches/mumps-shared-pord.patch
+++ /dev/null
@@ -1,77 +0,0 @@
-Create static and shared versions of the PORD library.
-
-Index: mumps/PORD/lib/Makefile
-===================================================================
---- mumps.orig/PORD/lib/Makefile
-+++ mumps/PORD/lib/Makefile
-@@ -9,7 +9,7 @@
-
- INCLUDES = -I../include
-
--COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS)
-+COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) -fPIC
-
- OBJS = graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o \
- multisector.o gelim.o bucket.o tree.o \
-@@ -24,12 +24,16 @@ OBJS = graph.o gbipart.o gbisect.o ddcre
- .c.o:
- $(CC) $(COPTIONS) -c $*.c $(OUTC)$*.o
-
--libpord$(LIBEXT):$(OBJS)
-- $(AR)$@ $(OBJS)
-+libpord$(PLAT).a:$(OBJS)
-+ $(AR) $@ $(OBJS)
- $(RANLIB) $@
-
-+libpord$(PLAT).so: $(OBJS)
-+ $(CC) -shared $(OBJS) -Wl,-soname,libpord$(PLAT)-5.2.1.so -o
libpord$(PLAT)-5.2.1.so -Wl,-z,defs
-+ ln -s libpord$(PLAT)-5.2.1.so $@
-+
- clean:
- rm -f *.o
-
- realclean:
-- rm -f *.o libpord.a
-+ rm -f *.o libpord*.a *.so
-Index: mumps/Makefile
-===================================================================
---- mumps.orig/Makefile
-+++ mumps/Makefile
-@@ -54,7 +54,7 @@ dexamples: d
- multi_example: s d c z
- (cd examples ; $(MAKE) multi)
-
--requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT)$(LIBEXT)
-+requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT).a
$(libdir)/libpord$(PLAT).so
-
- # dummy MPI library (sequential version)
-
-@@ -62,19 +62,25 @@ libseqneeded:
- (cd libseq; $(MAKE))
-
- # Build the libpord.a library and copy it into $(topdir)/lib
--$(libdir)/libpord$(PLAT)$(LIBEXT):
-+$(libdir)/libpord$(PLAT).a:
- if [ "$(LPORDDIR)" != "" ] ; then \
- cd $(LPORDDIR); \
- $(MAKE) CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" RANLIB="$(RANLIB)"
OUTC="$(OUTC)" LIBEXT=$(LIBEXT); \
- fi;
- if [ "$(LPORDDIR)" != "" ] ; then \
-- cp $(LPORDDIR)/libpord$(LIBEXT) $@; \
-+ cp $(LPORDDIR)/libpord$(PLAT).a $@; \
- fi;
-
-+$(libdir)/libpord$(PLAT).so:
-+ if [ "$(LPORDDIR)" != "" ] ; then \
-+ cd $(LPORDDIR); make CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" ARFUNCT=
RANLIB="$(RANLIB)" libpord$(PLAT).so; fi;
-+ if [ "$(LPORDDIR)" != "" ] ; then \
-+ cp -a $(LPORDDIR)/libpord*.so lib/; fi;
-+
- clean:
- (cd src; $(MAKE) clean)
- (cd examples; $(MAKE) clean)
-- (cd $(libdir); $(RM) *$(PLAT)$(LIBEXT))
-+ (cd $(libdir); $(RM) *$(PLAT).a *$(PLAT).so)
- (cd libseq; $(MAKE) clean)
- if [ "$(LPORDDIR)" != "" ] ; then \
- cd $(LPORDDIR); $(MAKE) realclean; \
- 07/18: gnu: gnome-shell-extension-appindicator: Update to 42., (continued)
- 07/18: gnu: gnome-shell-extension-appindicator: Update to 42., guix-commits, 2022/08/05
- 08/18: gnu: Add texlive-abstract., guix-commits, 2022/08/05
- 09/18: gnu: Add texlive-breqn., guix-commits, 2022/08/05
- 11/18: gnu: Add texlive-datatool., guix-commits, 2022/08/05
- 13/18: gnu: Add texlive-sourcesanspro., guix-commits, 2022/08/05
- 02/18: home: xdg: Use a single @ instead of @@., guix-commits, 2022/08/05
- 04/18: home: Use warning instead of display., guix-commits, 2022/08/05
- 01/18: disarchive-manifest: Filter out origins without a hash., guix-commits, 2022/08/05
- 10/18: gnu: Add texlive-comment., guix-commits, 2022/08/05
- 12/18: gnu: Add texlive-physics., guix-commits, 2022/08/05
- 16/18: gnu: mumps: Update to 5.5.1,
guix-commits <=
- 06/18: gnu: openssl: Keep .dll.a files in main output., guix-commits, 2022/08/05
- 17/18: gnu: mumps: Add alternate source code URL., guix-commits, 2022/08/05
- 18/18: guix system: Remove unused 'read-operating-system' procedure., guix-commits, 2022/08/05
- 15/18: gnu: Add texlive-sourcecodepro., guix-commits, 2022/08/05
- 14/18: gnu: Add texlive-sourceserifpro., guix-commits, 2022/08/05