[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
06/06: gnu: Add r-maxprobes.
From: |
guix-commits |
Subject: |
06/06: gnu: Add r-maxprobes. |
Date: |
Thu, 30 Mar 2023 08:43:04 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit caf163536afa02844c49b21726758854f871ea7a
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 14:40:01 2023 +0200
gnu: Add r-maxprobes.
* gnu/packages/bioinformatics.scm (r-maxprobes): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d0bcee5260..f7adca0860 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14156,6 +14156,32 @@ spatial single-cell expression data.")
annotation 1.0B5.")
(license license:artistic2.0))))
+(define-public r-maxprobes
+ (let ((commit "c2120dba972e12115280ef274ff80550cee5b264")
+ (revision "1"))
+ (package
+ (name "r-maxprobes")
+ (version (git-version "0.0.2" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/markgene/maxprobes")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1kij9bds2l9mwm519bzyd2608563qjlmbrayhva1s0vgml5iq9wh"))))
+ (properties `((upstream-name . "maxprobes")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-minfi r-minfidata))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/markgene/maxprobes")
+ (synopsis "Methylation array cross-reactive probes")
+ (description
+ "The Maxprobes package collects cross-reactive probes of Illumina
+methylation array 450K and EPIC/850K.")
+ (license license:gpl2+))))
+
(define-public gffread
;; We cannot use the tagged release because it is not in sync with gclib.
;; See https://github.com/gpertea/gffread/issues/26
- branch master updated (96e81b18b9 -> caf163536a), guix-commits, 2023/03/30
- 02/06: gnu: Add r-flowsorted-blood-450k., guix-commits, 2023/03/30
- 05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38., guix-commits, 2023/03/30
- 06/06: gnu: Add r-maxprobes.,
guix-commits <=
- 04/06: gnu: Add r-shinymethyl., guix-commits, 2023/03/30
- 01/06: gnu: Add r-enmix., guix-commits, 2023/03/30
- 03/06: gnu: Add r-flowsorted-blood-epic., guix-commits, 2023/03/30