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02/04: gnu: Add python-pyani.
From: |
guix-commits |
Subject: |
02/04: gnu: Add python-pyani. |
Date: |
Thu, 1 Jun 2023 14:48:47 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d411b7d5e7b17f1add3ea8df22560aea6e27c248
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Jun 1 15:00:16 2023 +0200
gnu: Add python-pyani.
* gnu/packages/bioinformatics.scm (python-pyani): New variable.
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 34d4a2e08c..fe43b04dcc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4659,6 +4659,27 @@ exploration.")
Illumina paired-end data (for CASAVA 1.8+).")
(license license:gpl2+)))
+(define-public python-pyani
+ (package
+ (name "python-pyani")
+ (version "0.2.12")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyani" version))
+ (sha256
+ (base32
+ "124kdg7168nbh4a5wisfws1fgkd89dd4js9v6dml2lvgclbv4mjg"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-biopython python-matplotlib python-pandas
+ python-scipy python-seaborn))
+ (home-page "https://widdowquinn.github.io/pyani/")
+ (synopsis "Calculate genome-scale average nucleotide identity")
+ (description
+ "Pyani provides a package and script for calculation of genome-scale
+average nucleotide identity.")
+ (license license:expat)))
+
(define-public exonerate
(package
(name "exonerate")