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branch master updated: gnu: Add r-singlet.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-singlet. |
Date: |
Fri, 02 Jun 2023 15:19:06 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new c11b92a8aa gnu: Add r-singlet.
c11b92a8aa is described below
commit c11b92a8aae6fe7fad0da8257ec28f5009c37b35
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 2 21:18:09 2023 +0200
gnu: Add r-singlet.
* gnu/packages/bioinformatics.scm (r-singlet): New variable.
---
gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e7c15f94c8..0b67d8fbe6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -872,6 +872,45 @@ high-throughput sequence analysis. The package is
primarily useful to
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-singlet
+ (let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
+ (revision "1"))
+ (package
+ (name "r-singlet")
+ (version (git-version "0.99.26" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/zdebruine/singlet")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "040v8wzl9qr8ribr6qss61fz4698d14cqs8nxbc8hqwiqlpy3vs4"))))
+ (properties `((upstream-name . "singlet")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-dplyr
+ r-fgsea
+ r-ggplot2
+ r-knitr
+ r-limma
+ r-matrix
+ r-msigdbr
+ r-rcpp
+ r-rcppml/devel
+ r-reshape2
+ r-scuttle
+ r-seurat))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/zdebruine/singlet")
+ (synopsis "Non-negative Matrix Factorization for single-cell analysis")
+ (description
+ "This is a package for fast @dfn{Non-negative Matrix
+Factorization} (NMF) with automatic rank-determination for dimension reduction
+of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and
+similar.")
+ (license license:gpl2+))))
+
(define-public r-stringendo
(let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01")
(revision "1"))
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