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branch gnome-team updated (16a5ce3bb7 -> 909788c0ae)


From: guix-commits
Subject: branch gnome-team updated (16a5ce3bb7 -> 909788c0ae)
Date: Thu, 8 Jun 2023 09:42:18 -0400 (EDT)

lilyp pushed a change to branch gnome-team
in repository guix.

    from 16a5ce3bb7 gnu: Make glibmm-next the new glibmm.
     add 51f2fe6542 gnu: Add r-consrank.
     add f69e0f7927 gnu: r-rgdal: Update to 1.6-7.
     add 01d9a691be gnu: r-rmarkdown: Update to 2.22.
     add a8ac423090 gnu: r-ggpicrust2: Update to 1.7.0.
     add 6b07e52752 gnu: r-ggrastr: Update to 1.0.2.
     add 4c14c0a574 gnu: r-sp: Update to 1.6-1.
     add c34e0df73e gnu: r-ucminf: Update to 1.2.0.
     add 2ebd2d1050 gnu: r-catdap: Update to 1.3.7.
     add e0e8974176 gnu: r-maptools: Update to 1.1-7.
     add 1a9d42ad1e gnu: r-biasedurn: Update to 2.0.10.
     add 399657122b gnu: r-performance: Update to 0.10.4.
     add 385b7f6ce6 gnu: r-ontologyindex: Update to 2.11.
     add 0ca364577a gnu: r-assertive-code: Update to 0.0-4.
     add d3bf7c1852 gnu: r-adabag: Update to 5.0.
     add 885811d599 gnu: r-regsem: Update to 1.9.5.
     add 944bcae0d4 gnu: r-stanheaders: Update to 2.26.26.
     add e786bef048 gnu: r-projpred: Update to 2.6.0.
     add a066040856 gnu: r-shapforxgboost: Update to 0.1.3.
     add 6c321bbded gnu: r-scico: Update to 1.4.0.
     add fccc10b655 gnu: r-stringfish: Update to 0.15.8.
     add 3f8a983cae gnu: r-mvtnorm: Update to 1.2-0.
     add 79b52c60e9 gnu: r-matrixstats: Update to 1.0.0.
     add da71721db1 gnu: r-biased-urn: Update to 2.0.10.
     add f2f8e2fa2f gnu: notcurses: Update to 3.0.9.
     add 1569f7d77e gnu: Add s7-bootstrap.
     add 76b7c50645 gnu: Add s7.
     add 9cf6833033 gnu: Remove obs-spectralizer.
     add c5aeb15267 gnu: guix-build-coordinator: Update to 0-85.c44d485.
     add f30f8ecc69 gnu: python-zulip: Fix test failure.
     add e8eb389594 gnu: guile-png: Update to 0.5.0.
     add 66c9b82fed gnu: emacs-straight-el: Update to 0-2.039e5c9.
     add bb3454a83f gnu: notcurses: Enable building without pandoc.
     add b3492964c2 gnu: font-charter: Remove woff2 output.
     add 07ac0cb722 gnu: d-feet: Fix build errors when using Meson 1.1.0.
     add 0d6749be37 gnu: mpd: Update to 0.23.13.
     add 709fd0e5e0 gnu: mpd: Enable tests.
     add 65bce4d9f9 gnu: mpd: Split outputs.
     add f4f5ee6ad6 services: screen-locker-service-type: Configurable PAM and 
setuid.
     add 94879ff743 gnu: heimdal: Run autoreconf.
     add d89247150f gnu: heimdal: Drop obsolete and insecure user tools.
     add b741218e91 gnu: proot: Update to 5.4.0 and fix clone3 behavior.
     add f72f3a909a gnu: sbsigntools: Update to 0.9.5.
     add 1a4aace3af records: match-record: Raise a syntax error if TYPE is 
nonexistent.
     add b88e38d4b5 records: match-record: Support thunked and delayed fields.
     add e6dc1d3996 dir-locals: Fix MATCH-RECORD indentation.
     add 4cd5293621 records: Add MATCH-RECORD-LAMBDA.
     add f045c7ac80 records: match-record: Do not show internal form.
     add 178ffed3b7 tests: records: Add test for ellipsis in body.
     add 89f8fc9c95 gnu: Add ghc-peano.
     add cc67085077 gnu: Add ghc-vector-hashtables.
     add af5d228b13 gnu: agda: Update to 2.6.3 and switch to git-fetch.
     add 789db27c51 gnu: agda: Build info manual.
     add fe6c31e333 gnu: emacs-agda2-mode: No longer inherit from agda.
     add ae29c9d26e gnu: emacs-agda2-mode: Switch to G-Exps.
     add 7a00ab0532 gnu: agda: Add AGDA_LIBDIRS search-path.
     add 0769a9b3c5 build-system/haskell: Export default-haskell.
     add 80d1228321 build-system: New agda-build-system.
     add c1f8bcbbda gnu: Add agda-stdlib.
     add 8203e8f3c9 gnu: Add agda-categories.
     add cf2c3f7970 gnu: Add agda-cubical.
     add 067e75e17a gnu: Add agda-1lab.
     add e198fe4e94 gnu: agda-ial: Update to 
ded30c410d5d40142249686572aa1acd1b2f8cc7.
     add cacc0cb6ab channels: Raise an error if dependency's introduction is 
malformed
     add d845178050 gnu: libdeflate: Use default tests.
     add 81515a4029 gnu: libxtst: Fix cross-compiling to riscv64.
     add 0ee6c9ea01 gnu: xcb-util-wm: Fix cross-compiling to riscv64.
     add 188da31fe5 gnu: mtdev: Fix cross-compiling to riscv64.
     add 3f45c3b12b gnu: gobject-introspection: Fix cross-compiling.
     add 713da38002 gnu: gsettings-desktop-schemas: Fix cross-compiling.
     add 4f3e5548fc gnu: libicns: Fix cross-compiling to riscv64.
     add ae04b3996b gnu: jpegoptim: Fix cross-compiling to riscv64.
     add 9d9e793da5 gnu: tree: Update to 2.1.1.
     add f8b82976d6 gnu: urlscan: Update to 1.0.0.
     add c15470671a gnu: keepassxc: Update to 2.7.5.
     add eed55a6544 gnu: lagrange: Update to 1.16.3.
     add a95edc3d7b gnu: mupdf: Update to 1.22.1.
     add 940665301d gnu: gcompris-qt: Update to 3.2.
     add 91e75bb35f gnu: Add python-readpaf.
     add 6559adea29 gnu: Add python-bulkvis.
     add 1671aa25d4 gnu: python-bokeh: Use Tornado 6.
     add 46fc4c01a0 gnu: python-tenacity: Use Tornado 6.
     add 77d6d5783b gnu: python-tenacity: Use pyproject-build-system.
     add 4f2ec0f2d1 gnu: python-bulkvis: Reference upstream issue.
     add 52e0a77a1b gnu: proj-7: Add upstream patch.
     add a025d8fee6 import/cran: Ensure current package is not among inputs.
     add 5cf38fb6d6 doc: cookbook: Update example my-libgit2 package.
     add cad86f8dcd gnu: python-codespell: Update to 2.2.4.
     add c1b8f1bc7a doc: Fix some typos in the manual.
     add ff6bb37299 gnu: cpp-httplib: Update to 0.12.5.
     add f598f5b870 gnu: blurhash: Update to 0.2.0.
     add b3dfa5b671 gnu: linux-libre: Update to 6.3.6.
     add 455e88bc84 gnu: linux-libre 6.1: Update to 6.1.32.
     add f9755ff2ac gnu: linux-libre 5.15: Update to 5.15.115.
     add 00e2d8d8ae gnu: linux-libre 5.10: Update to 5.10.182.
     add 8937898af9 gnu: linux-libre 5.4: Update to 5.4.245.
     add d6ae80c742 gnu: thc-ipv6: Do not build with "-march=native".
     add cdbd87b6f3 gnu: libjaylink: Update to 0.3.1.
     add f351f2aaf2 gnu: jimtcl: Update to 0.82.
     add e3cd3f0320 gnu: openocd: Update to 0.12.0.
     add b019b49c74 gnu: sbcl: Update to 2.3.5.
     add b30c60316c gnu: txr: Update to 287.
     add 9ad8b0c2ef gnu: sbcl-stmx: Update to 2.0.5-2.f71e742.
     add d62c6170ef doc: Add missing node to the main menu.
     add dc0c5d56ee records: Use SRFI-11 instead of SRFI-71, for Guile 2.0 
compatibility.
     add 1819512073 services: 'modify-services' preserves service ordering.
     add f800e7e88b gnu: Add r-caretensemble.
     add 0ae29db11d gnu: python-anaconda-client: Fix build with Python 3.10.
     add 1a2eb26286 services: Check if service is #f before applying clause.
     add 2199546a83 gnu: nim: Update to 1.6.12.
     add 72243da2fb gnu: icecat: Update to 102.12.0-guix0-preview1 [security 
fixes].
     add f056d4f168 gnu: Add python-decoupler-py.
     add 2df940ab27 gnu: kirigami-addons: Update to 0.8.0.
     add 5b3931c2ae gnu: sonnet: Add support for aspell dictionaries.
     add ec9f15b158 gnu: wxwidgets: Add libxtst to inputs.
     add b775c39b2c gnu: openconnect: Fix indentation, remove input labels and 
use gexps.
     add 8f90ab2dd4 gnu: openconnect: Update to 9.12.
     add b3f7f5eb53 gnu: fltk: Update to 1.3.8.
     add f8b1e50f30 gnu: fltk: Update source uri.
     add a6e21911bf gnu: hdf4: Add support for riscv64-linux.
     add 269fa79398 gnu: python-can: Update to 4.2.0.
     add 15083a2fc3 gnu: python-can: Simplify package style.
     add 25fdd2e3af gnu: Delete duplicated use-module from (gnu package 
python-xyz).
     add 4a5bbd293f gnu: Sort use-module alphabetically in (gnu packages 
python-xyz).
     add 2a6d2fc1d8 gnu: sbcl: fix build on riscv64-linux.
     add df18bc8900 Revert "gnu: sbcl: fix build on riscv64-linux."
     add 8504fad80c gnu: sbcl: fix build on riscv64-linux.
     add 433ca5a5c5 gnu: Add python-clickhouse-connect.
     add f57acde70b gnu: python-flit: Update to 3.8.0.
     add 21696dce05 gnu: sbcl-cl-webkit: Update to 3.5.9.
     add e8f9fb3e03 gnu: conky: Update to 1.19.2.
     add b9eb74d655 gnu: python-pyarrow: Include dataset support.
     add d7e0306aa5 gnu: Add python-duckdb.
     add ffcd2315e4 gnu: Add python-pubmed-parser.
     add d8dcd1200a gnu: Add python-srsly.
     add 0836c0769d gnu: Add python-confection.
     add 28d5ec153c gnu: blis: Update to 0.9.0.
     add 069618522d gnu: Add python-blis.
     add 2ab5307488 gnu: yoshimi: Update to 2.3.0.
     add e3f148a6df gnu: Add python-spacy-legacy.
     add db8cf18517 gnu: Add python-spacy-loggers.
     add c3f7823670 gnu: Add python-blis-for-thinc.
     add 7a78dd1e39 gnu: Add python-thinc.
     add d3934c7cc2 gnu: Add python-pathy.
     add 266e54d7cb gnu: Add python-spacy.
     add 2d9601ed3d gnu: libxfce4ui: Update to 4.18.4.
     add 0a8fbee0d1 gnu: xfce4-panel: Update to 4.18.4.
     add cbeb3204ef gnu: xfce4-screenshooter: Update to 1.10.4.
     add 756ccd9202 gnu: xfce4-pulseaudio-plugin: Update to 0.4.7.
     add 60c09c3b5e gnu: xfce4-session: Update to 4.18.3.
     add 47085b3ea0 gnu: xfce4-power-manager: Update to 4.18.2.
     add 91454f54a4 gnu: xfce4-screensaver: Update to 4.18.2.
     add 872b248745 gnu: sbcl: Fix build on armhf.
     new 909788c0ae Merge branch 'master' into gnome-team

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .dir-locals.el                                     |   3 +-
 Makefile.am                                        |   2 +
 doc/guix-cookbook.texi                             |  19 +-
 doc/guix.texi                                      |  84 +++--
 gnu/local.mk                                       |   8 +
 gnu/packages/admin.scm                             |  12 +-
 gnu/packages/agda.scm                              | 246 ++++++++++++---
 gnu/packages/bioconductor.scm                      |   6 +-
 gnu/packages/bioinformatics.scm                    | 151 +++++++++
 gnu/packages/compression.scm                       |  10 +-
 gnu/packages/conky.scm                             |   4 +-
 gnu/packages/cpp.scm                               |  27 +-
 gnu/packages/cran.scm                              | 144 ++++++---
 gnu/packages/databases.scm                         |   8 +-
 gnu/packages/education.scm                         |  12 +-
 gnu/packages/efi.scm                               |  59 ++--
 gnu/packages/emacs-xyz.scm                         |   6 +-
 gnu/packages/embedded.scm                          |  44 +--
 gnu/packages/fltk.scm                              |   8 +-
 gnu/packages/fonts.scm                             |  13 +-
 gnu/packages/geo.scm                               |   4 +-
 gnu/packages/glib.scm                              |   5 +-
 gnu/packages/gnome.scm                             |   7 +-
 gnu/packages/gnuzilla.scm                          |  12 +-
 gnu/packages/guile-xyz.scm                         |   4 +-
 gnu/packages/haskell-xyz.scm                       |  42 +++
 gnu/packages/image.scm                             |  47 ++-
 gnu/packages/kde-frameworks.scm                    |   4 +-
 gnu/packages/kde.scm                               |  15 +-
 gnu/packages/kerberos.scm                          |  36 +--
 gnu/packages/linux.scm                             |  27 +-
 gnu/packages/lisp-xyz.scm                          |  24 +-
 gnu/packages/lisp.scm                              | 144 ++++++++-
 gnu/packages/machine-learning.scm                  | 146 +++++++++
 gnu/packages/mail.scm                              |  11 +-
 gnu/packages/maths.scm                             | 180 ++++++-----
 gnu/packages/messaging.scm                         |   9 +-
 gnu/packages/mpd.scm                               |  25 +-
 gnu/packages/music.scm                             |   4 +-
 gnu/packages/networking.scm                        |   7 +-
 gnu/packages/nim.scm                               |   8 +-
 gnu/packages/notcurses.scm                         |  18 +-
 gnu/packages/package-management.scm                |  59 ++--
 gnu/packages/password-utils.scm                    |   6 +-
 ...agda-categories-remove-incompatible-flags.patch |  31 ++
 .../patches/agda-categories-use-find.patch         |  31 ++
 .../patches/agda-libdirs-env-variable.patch        |  49 +++
 .../patches/agda-stdlib-use-runhaskell.patch       |  28 ++
 .../d-feet-drop-unused-meson-argument.patch        |  36 +++
 gnu/packages/patches/hdf4-architectures.patch      |  75 ++++-
 .../patches/proj-7-initialize-memory.patch         |  98 ++++++
 gnu/packages/patches/proot-add-clone3.patch        | 114 +++++++
 .../sbcl-riscv-Make-contribs-build-again.patch     |  71 +++++
 gnu/packages/pdf.scm                               |   4 +-
 gnu/packages/python-xyz.scm                        | 347 ++++++++++++++++-----
 gnu/packages/statistics.scm                        |  20 +-
 gnu/packages/video.scm                             |  31 --
 gnu/packages/vpn.scm                               |  56 ++--
 gnu/packages/web-browsers.scm                      |   4 +-
 gnu/packages/wxwidgets.scm                         |   1 +
 gnu/packages/xdisorg.scm                           |  25 +-
 gnu/packages/xfce.scm                              |  28 +-
 gnu/packages/xorg.scm                              |  46 ++-
 gnu/services.scm                                   |  95 ++++--
 gnu/services/desktop.scm                           |   6 +-
 gnu/services/xorg.scm                              |  65 ++--
 guix/build-system/{node.scm => agda.scm}           | 108 +++----
 guix/build-system/haskell.scm                      |   1 +
 guix/build/agda-build-system.scm                   | 128 ++++++++
 guix/channels.scm                                  |   9 +-
 guix/import/cran.scm                               |  27 +-
 guix/read-print.scm                                |   1 +
 guix/records.scm                                   |  92 ++++--
 tests/records.scm                                  |  54 ++++
 tests/services.scm                                 |  37 +--
 75 files changed, 2667 insertions(+), 761 deletions(-)
 create mode 100644 
gnu/packages/patches/agda-categories-remove-incompatible-flags.patch
 create mode 100644 gnu/packages/patches/agda-categories-use-find.patch
 create mode 100644 gnu/packages/patches/agda-libdirs-env-variable.patch
 create mode 100644 gnu/packages/patches/agda-stdlib-use-runhaskell.patch
 create mode 100644 gnu/packages/patches/d-feet-drop-unused-meson-argument.patch
 create mode 100644 gnu/packages/patches/proj-7-initialize-memory.patch
 create mode 100644 gnu/packages/patches/proot-add-clone3.patch
 create mode 100644 
gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch
 copy guix/build-system/{node.scm => agda.scm} (56%)
 create mode 100644 guix/build/agda-build-system.scm



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