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24/36: gnu: bioruby: Update to 2.0.4.
From: |
guix-commits |
Subject: |
24/36: gnu: bioruby: Update to 2.0.4. |
Date: |
Tue, 20 Jun 2023 17:19:26 -0400 (EDT) |
cbaines pushed a commit to branch master
in repository guix.
commit 7b535eb29b9d52221f65bd3ca9d9ae53baad0cac
Author: Christopher Baines <mail@cbaines.net>
AuthorDate: Sun Jun 18 12:17:53 2023 +0100
gnu: bioruby: Update to 2.0.4.
* gnu/packages/bioinformatics.scm (bioruby): Update to 2.0.4.
[arguments]: Update style.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++----------------
1 file changed, 16 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9e356cba5d..4edcc28d12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10876,34 +10876,34 @@ generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV,
tabular output etc.")
(define-public bioruby
(package
(name "bioruby")
- (version "1.5.2")
+ (version "2.0.4")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "bio" version))
(sha256
(base32
- "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
+ "08aknxk2ingwscwfqpw5vnax6jpk1sxfaialravladb63hcl8dx9"))))
(build-system ruby-build-system)
(propagated-inputs
(list ruby-libxml))
(native-inputs
(list which)) ; required for test phase
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'build 'patch-test-command
- (lambda _
- (substitute* '("test/functional/bio/test_command.rb")
- (("/bin/sh") (which "sh")))
- (substitute* '("test/functional/bio/test_command.rb")
- (("/bin/ls") (which "ls")))
- (substitute* '("test/functional/bio/test_command.rb")
- (("which") (which "which")))
- (substitute* '("test/functional/bio/test_command.rb",
- "test/data/command/echoarg2.sh")
- (("/bin/echo") (which "echo")))
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'patch-test-command
+ (lambda _
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("/bin/sh") (which "sh")))
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("/bin/ls") (which "ls")))
+ (substitute* '("test/functional/bio/test_command.rb")
+ (("which") (which "which")))
+ (substitute* '("test/functional/bio/test_command.rb"
+ "test/data/command/echoarg2.sh")
+ (("/bin/echo") (which "echo"))))))))
(synopsis "Ruby library, shell and utilities for bioinformatics")
(description "BioRuby comes with a comprehensive set of Ruby development
tools and libraries for bioinformatics and molecular biology. BioRuby has
- 25/36: gnu: ruby-ptools: Update to 1.5.0., (continued)
- 25/36: gnu: ruby-ptools: Update to 1.5.0., guix-commits, 2023/06/20
- 19/36: gnu: ruby-mkmf-lite: Update to 0.5.2., guix-commits, 2023/06/20
- 20/36: gnu: ruby-memory-profiler: Update to 1.0.1., guix-commits, 2023/06/20
- 23/36: gnu: ruby-commander: Update to 4.6.0., guix-commits, 2023/06/20
- 28/36: gnu: ltris: Update to 1.2.6., guix-commits, 2023/06/20
- 31/36: gnu: batsignal: Update to 1.6.4., guix-commits, 2023/06/20
- 30/36: gnu: audacity: Update to 3.3.3., guix-commits, 2023/06/20
- 33/36: gnu: fnott: Update to 1.4.0., guix-commits, 2023/06/20
- 34/36: gnu: fvwm: Update to 2.7.0., guix-commits, 2023/06/20
- 35/36: gnu: recastnavigation: Update to 1.6.0., guix-commits, 2023/06/20
- 24/36: gnu: bioruby: Update to 2.0.4.,
guix-commits <=
- 26/36: gnu: guile-next: Update to 3.0.9-0.aa2cfe7., guix-commits, 2023/06/20
- 27/36: gnu: zeal: Update to 0.6.1-1.1cfa7c6., guix-commits, 2023/06/20
- 29/36: gnu: barrage: Update to 1.0.7., guix-commits, 2023/06/20
- 32/36: gnu: celluloid: Update to 0.25., guix-commits, 2023/06/20
- 36/36: gnu: python-pyvista: Update to 0.39.1., guix-commits, 2023/06/20