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[PATCH] gnu: Add bio-blastxmlparser.
From: |
Pjotr Prins |
Subject: |
[PATCH] gnu: Add bio-blastxmlparser. |
Date: |
Wed, 16 Sep 2015 08:53:13 +0200 |
User-agent: |
Heirloom mailx 12.5 6/20/10 |
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1f34211..b9e1158 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2642,3 +2642,28 @@ position for indels. Bio-locus allows users to store
this chr+pos or
chr+pos+alt information in a database.")
(home-page "https://github.com/pjotrp/bio-locus")
(license license:expat)))
+
+(define-public bio-blastxmlparser
+ (package
+ (name "bio-blastxmlparser")
+ (version "2.0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-blastxmlparser" version))
+ (sha256
+ (base32
+ "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
+ (build-system ruby-build-system)
+ (propagated-inputs
+ `(("ruby-bio-logger" ,ruby-bio-logger)
+ ("ruby-nokogiri" ,ruby-nokogiri)))
+ (inputs
+ `(("ruby-rspec" ,ruby-rspec)))
+ (synopsis "Fast big data BLAST XML parser and library")
+ (description "Very fast parallel big-data BLAST XML file parser
+which can be used as command line utility. Use blastxmlparser to:
+Parse BLAST XML; filter output; generate FASTA, JSON, YAML, RDF,
+JSON-LD, HTML, csv, tabular output etc.")
+ (home-page "http://github.com/pjotrp/blastxmlparser")
+ (license license:expat)))
--
2.4.3
- [PATCH] gnu: Add bio-blastxmlparser.,
Pjotr Prins <=