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Re: [PATCH 7/7] gnu: Add r-bioccheck.
From: |
Ricardo Wurmus |
Subject: |
Re: [PATCH 7/7] gnu: Add r-bioccheck. |
Date: |
Mon, 19 Sep 2016 14:37:55 +0200 |
User-agent: |
mu4e 0.9.16; emacs 25.1.1 |
Roel Janssen <address@hidden> writes:
> * gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
> ---
> gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
> 1 file changed, 29 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 902d1d2..00a4161 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -5426,6 +5426,35 @@ like automatically generated help option and usage,
> support for default
> values, positional argument support, etc.")
>
> (license license:gpl2+)))
>
> +(define-public r-bioccheck
> + (package
> + (name "r-bioccheck")
> + (version "1.8.2")
> + (source (origin
> + (method url-fetch)
> + (uri (bioconductor-uri "BiocCheck" version))
> + (sha256
> + (base32
> + "0bvkhxmr25nb0gkncifbc3x48i5zgls3737g3xais6jx16wd4q35"))))
> + (properties
> + `((upstream-name . "BiocCheck")))
> + (build-system r-build-system)
> + (inputs
> + `(("which" ,which)))
Is this a native input?
> + (propagated-inputs
> + `(("r-graph" ,r-graph)
> + ("r-knitr" ,r-knitr)
> + ("r-httr" ,r-httr)
> + ("r-optparse" ,r-optparse)
> + ("r-devtools" ,r-devtools)
> + ("r-biocinstaller" ,r-biocinstaller)
> + ("r-biocviews" ,r-biocviews)))
> + (home-page "http://bioconductor.org/packages/BiocCheck")
> + (synopsis "Executes Bioconductor-specific package checks")
> + (description "This package executes Bioconductor-specific
> +package checks.")
Well… okay. :) It would be nice if it was a little more specific.
Maybe:
This package contains tools to perform quality checks on R packages
that are to be submitted to the Bioconductor repository.
WDYT?
~~ Ricardo