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bug#26095: R: do not build recommended packages
From: |
Leo Famulari |
Subject: |
bug#26095: R: do not build recommended packages |
Date: |
Wed, 15 Mar 2017 16:51:43 -0400 |
User-agent: |
Mutt/1.8.0 (2017-02-23) |
On Tue, Mar 14, 2017 at 09:28:55AM +0100, Ricardo Wurmus wrote:
> This relates to bug 25598 “R packages are not bit-reproducible”. R
> itself does not build reproducibly. One of the reasons is that it
> includes recommended packages that are built in a random temporary
> directory. The build paths for each of these packages is then embedded
> in the packages’ “paths.rds” files.
>
> We don’t have this problem when building the packages with the
> “r-build-system” like any other R package.
>
> This patch set adds package expressions for each of the recommended
> packages, disables building of recommended packages, and adds some of
> these packages to those R packages that need them.
>
> I’ve successfully rebuilt all R packages to make sure that these changes
> don’t break anything.
>
> I also have an unpolished patch to fix bug 25598, but it depends on this
> patch set.
Overall this patch series LGTM. I leave it up to you and the other
bio-info hackers to decide if it's the best solution.
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- bug#26095: [PATCH 11/17] gnu: r-mgcv: Move to set of recommended R packages., (continued)
- bug#26095: [PATCH 11/17] gnu: r-mgcv: Move to set of recommended R packages., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 12/17] gnu: r-nnet: Move to set of recommended R packages., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 07/17] gnu: Add r-kernsmooth., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 10/17] gnu: Add r-nlme., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 13/17] gnu: r-rpart: Move to the set of recommended packages., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 17/17] gnu: Add r-with-recommended-packages., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 14/17] gnu: Add r-spatial., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 04/17] gnu: Add r-cluster., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 15/17] gnu: r-survival: Move to set of recommended R packages., Ricardo Wurmus, 2017/03/14
- bug#26095: [PATCH 16/17] gnu: r: Do not build recommended packages., Ricardo Wurmus, 2017/03/14
- bug#26095: R: do not build recommended packages,
Leo Famulari <=
- bug#26095: R: do not build recommended packages, Ben Woodcroft, 2017/03/15